Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq252 91.5 1e-13 >seq252 Length=6430 Score = 91.5 bits (100), Expect = 1e-13 Identities = 208/311 (67%), Gaps = 4/311 (1%) Strand=Plus/Plus Query 126080 ATGATTGGAATAAATATGTGCATCTCCAAATGTATGAATGAATTCACCCACCTCAAGTCC 126139 |||||| ||||| ||| |||| ||| ||| ||| || |||||| | | | Sbjct 5062 ATGATTATTATAAACATGAGCATTTCCCAATACATGTATAAATTCAGCTGGTTGTAAATT 5121 Query 126140 ACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACC 126199 |||| ||| ||| | | || ||| | || || ||| ||||||||||| |||||||| Sbjct 5122 ACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAATATTGAATGGAACACC 5181 Query 126200 TAAAAATATATCAGCACTTCTTTGAT--ATAATTGACAATTTAATTTACCCTCTTGTACG 126257 | | || |||| | |||||||| ||||| ||| |||||| || || || Sbjct 5182 AAGACCTAAATCACAAGATCTTTGATACATAAT--ACATGATAATTTTCCATCAAAAACA 5239 Query 126258 TAAAATTGAAACATTGTGTGGCAAGGTGGTAATGCCATTGAATCGATTTCAGTAGGATTC 126317 ||||||||| | | | || ||||| |||||||||||| ||| | || | |||| Sbjct 5240 TAAAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAATCTTTTACATTC 5299 Query 126318 CATGCTGAAACAATGTGACGTCGAGAGTTTGGATTGGTTTTAATTTGTTGTATAACTGAT 126377 ||||| | | ||| |||| | | | |||| | |||||||| | ||||| | Sbjct 5300 CATGCACATAAAATAATTCGTCTACATGTCGGATCGTTTTTAATTAAATTTATAATATTT 5359 Query 126378 TTTAATTGATC 126388 ||||| ||||| Sbjct 5360 TTTAACTGATC 5370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408545166012830