Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3686 219 4e-52 >seq3686 Length=1345 Score = 219 bits (242), Expect = 4e-52 Identities = 591/889 (66%), Gaps = 25/889 (3%) Strand=Plus/Plus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 |||||| ||||||| || || | |||| |||||| |||||||| ||||| |||| ||| Sbjct 312 AACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAA 371 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 || || ||||| || ||| ||||| ||| | | || ||| || || Sbjct 372 AGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAA 431 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 | | | | ||||| ||||| |||||||| || || || ||| ||| | || || Sbjct 432 ACATTCTAATAATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCAT 491 Query 4427 TCCAATTAATCTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTAT--AGTT--ACG 4481 ||||||||| ||||| |||| | || ||| ||| || ||| | | || || Sbjct 492 TCCAATTAAA-TCACAAGGTAAAG---AT-TCACAAATAAATGATCTTTCTACTTCAACT 546 Query 4482 GCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAAC 4541 |||||| | | ||||| || | |||| | | ||||||| | || | | | | Sbjct 547 GCTTCTTTAACTATATTTTGAACAACCTCTTCTGGTAATTTATTTTCCAACAAGCTATAA 606 Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 | |||||| |||||| || || ||||| ||||| ||||||| ||| ||| ||| Sbjct 607 ATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAAT 666 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661 ||||| || | | | | | ||||||| ||||||||| || ||| ||| | Sbjct 667 GTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTA 726 Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG 4721 || ||||| ||||| || ||| ||||| | || | || ||| | | | Sbjct 727 AATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCG---TA 783 Query 4722 TCTTTAATCCATTTTAATGCCCAGTTAGCTTT-TTTCTTAACGCACGGAATTGTGTATAT 4780 || || |||||||| |||||| ||||| ||| ||| || || || | | || Sbjct 784 TCATTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCT-GGTATATTTTCAAT 842 Query 4781 AGCGTTAAATAA-TTTACTTT---TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTA 4836 ||| | |||||| |||| | | |||| || | ||||||| | || |||| || Sbjct 843 AGCATGAAATAAATTTAATCTCTCTTTCTCATCCCT----AATATAATTATCAATTAATA 898 Query 4837 GGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG 4896 ||||| ||||||| ||||||||||| | ||| || ||||| | ||||| | | | Sbjct 899 AACTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGG 958 Query 4897 CTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTA-CTAAGTTTTCGTTTACTATACCG 4955 |||| ||| ||| ||||| | ||||| || ||| |||| ||||| |||||| || Sbjct 959 CTTCAATTATTTGTACTTCTCTTAAAAAT-TTACTAGCTAAATTTTCTAATACTATTCCA 1017 Query 4956 TCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT 5015 ||||| ||||||||||| || | ||||| |||||| | | ||| | || | | Sbjct 1018 TCACTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAAT 1077 Query 5016 TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075 |||| ||| |||||| | | |||||| | ||||||| |||||||||| || || Sbjct 1078 TTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCC 1137 Query 5076 TCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTA 5124 || |||||||| || | | ||| | ||||||||| ||| ||| ||| Sbjct 1138 TCAGCTTTTTTATAAAAATTCCATACTTCAGGATACATAATAGGATGTA 1186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426993962109770