Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2587 320 2e-82 seq3686 232 9e-56 seq9906 105 9e-18 >seq2587 Length=1884 Score = 320 bits (354), Expect = 2e-82 Identities = 717/1061 (68%), Gaps = 28/1061 (3%) Strand=Plus/Plus Query 77157 TAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAA 77216 ||||| ||||| ||||||||||| | |||||||| ||||| |||||||| | || ||| Sbjct 832 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAA 891 Query 77217 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCT 77276 || |||||||||||||| | | | | |||||| | || ||| | || ||||| | | Sbjct 892 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTT 951 Query 77277 TTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAA---CATCCCAAAGATCGTATTGT 77333 |||| | | |||||||||| | | ||| ||| ||| | ||| ||||| Sbjct 952 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 1011 Query 77334 AGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCT 77393 | ||||| | || || || | ||||| |||||| ||||| | || || Sbjct 1012 AATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGTGCC 1071 Query 77394 AGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAAT-CTTCTTATTGAG 77452 | |||| | | ||| || || | ||||| || ||||| || || ||||| ||| | Sbjct 1072 AATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATTTAA 1130 Query 77453 ATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCC 77512 |||| ||||| | ||| | ||||| |||||| ||||| | |||||||||||| Sbjct 1131 TTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCC 1190 Query 77513 CTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGG 77572 || ||||| || ||||||||||||||||| ||||| || ||| |||||| || || Sbjct 1191 TTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAACTGG 1250 Query 77573 ATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTT 77632 ||||||||| | || |||||||||| | ||||||| || | |||| | || | Sbjct 1251 ATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATA 1310 Query 77633 TAGTTTAAGAAAATCAAA-----TCTTCCATCTAT-AACAAACATGTTCAAAGCTATAGA 77686 || ||| ||||| ||| | || ||||| |||||| || || || || || Sbjct 1311 TAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATGGA 1370 Query 77687 TGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAG 77746 |||| ||||||||| ||||| |||| || | ||||| || || || |||| Sbjct 1371 AGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATTA 1430 Query 77747 ATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTT 77806 |||||| ||||| || || || | ||||| ||| || || ||| |||| || || Sbjct 1431 ATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCATCTTT 1490 Query 77807 ATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGAC 77866 ||| | ||| | || || ||||| || || | || | ||||| | || || Sbjct 1491 ATATAACATATATGGTACACCAGTTTCTATTTG-GCTTTG-TAATA---TAGCAAACCCA 1545 Query 77867 TCTAGCTTTT---ATCATAGATTTGTATC----GCCTCTCTCTTTCATATTGAGTATAT- 77918 | | ||| | | || | ||| | || | | ||| ||| |||| |||||| Sbjct 1546 TAAATCTTGTGCAAGAATTGTTTTTTTTCCCAAGATTTTCTTCTTCGTATTTTGTATATA 1605 Query 77919 AGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA-CAT 77977 | ||||||||| || ||||| ||| || || || ||||| || ||||| ||| Sbjct 1606 ATTTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCACCAT 1665 Query 77978 CAATGACCAGTCACCATCTTCCTTAACTC-GTTTCATAAAGAGATCAGGTATCCATAGAG 78036 || | ||||| || |||||| |||| ||||||||| | |||||||| ||| | || Sbjct 1666 TAAAGTCCAGTTCTTATTTTCCTTTACTCTTTTTCATAAATAAATCAGGTACCCAAATAG 1725 Query 78037 CAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAA 78096 || ||||| ||| || | ||| |||||| || || ||| ||| | | ||| | || Sbjct 1726 CATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAA 1785 Query 78097 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTAT 78156 | || | |||||| |||||||||||||| | ||||| | || || | || ||| Sbjct 1786 ATTCAAAAATATCTGAATGCCATGGTTCAACATATACAG-CAAAAGAACTTTTCTTTTCC 1844 Query 78157 TACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACT 78197 | || || ||||||| |||||| || || | |||| ||||| Sbjct 1845 T-CCACCTTGATCTACATATCTTGCTGTATAATTAAAAACT 1884 >seq3686 Length=1345 Score = 232 bits (256), Expect = 9e-56 Identities = 393/562 (70%), Gaps = 12/562 (2%) Strand=Plus/Plus Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194 |||||||| |||||| || | ||||||||||||||||| ||||| ||| |||| Sbjct 607 ATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAAT 666 Query 48195 GTGAGACCGGGCA--TTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG 48252 || | ||| | | ||| | ||||||| | |||||||||||| ||| |||| Sbjct 667 GTTAAACCATGTAATTTATTTT--GTTTTTTAAACCAAAATATTGCACAAAAACTTCCAC 724 Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGT 48312 ||| ||||| ||||| || ||| || || ||| || | || | ||||| Sbjct 725 TAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAG--TTCGT 782 Query 48313 TG--TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTAT 48370 | |||||| |||||| || || || |||| || || |||| || Sbjct 783 ATCATTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAAT 842 Query 48371 AGCATTAAAGAGAAAGtttttttCA-TTGCT-ATCTTTAACGTAAGTATCTATTAAAAGA 48428 ||||| ||| | || || | || || || ||| ||| ||| |||| ||||| | | Sbjct 843 AGCATGAAATA--AATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAA 900 Query 48429 CTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCT 48488 ||||| |||| ||||| |||||||||| || || ||||| | ||||| | | ||| Sbjct 901 CTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCT 960 Query 48489 TCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCA 48548 || | || ||||| || | ||||| ||| ||||| || ||||||||||||| Sbjct 961 TCAATTATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCA 1020 Query 48549 CTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTA 48608 ||||| ||||||||||||| |||||||| ||||||| |||||| || | | | ||| Sbjct 1021 CTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTT 1080 Query 48609 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCT 48668 | |||| || | ||| |||||| ||||| ||||||||| ||||||||||| ||||| Sbjct 1081 TCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCA 1140 Query 48669 GCTTTTTTATACATATTCCATA 48690 ||||||||||| | |||||||| Sbjct 1141 GCTTTTTTATAAAAATTCCATA 1162 >seq9906 Length=546 Score = 105 bits (116), Expect = 9e-18 Identities = 214/315 (68%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 78282 CCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCC 78341 ||||| |||||||| | ||| || | || || | || ||||| || | ||||| Sbjct 467 CCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACCT 408 Query 78342 TCTATACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGT 78400 ||||| ||| |||| | ||| || ||| || ||||||||| | || Sbjct 407 TCTATTGAATCAGATTTCATTGATAATAA-AAAGCATGAAGACATTTGGGGTCTTGGTGT 349 Query 78401 TCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTA 78460 ||| | |||||||||||| |||| ||||| ||||| |||||| || | || || || Sbjct 348 TCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAATGATA 289 Query 78461 TGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACAT 78520 ||||| | ||| ||| | || | ||| ||||||| | ||| | ||| || | Sbjct 288 AGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATAA 229 Query 78521 ATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 78580 ||||||||| | ||||| | |||||||| || || ||||| || |||| || || Sbjct 228 ATGCTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAATGT 169 Query 78581 TTTAAAACCAAAATA 78595 |||||| |||||||| Sbjct 168 TTTAAATCCAAAATA 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694575974881600