Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2587 320 2e-82 seq3686 219 6e-52 >seq2587 Length=1884 Score = 320 bits (354), Expect = 2e-82 Identities = 753/1114 (68%), Gaps = 42/1114 (4%) Strand=Plus/Plus Query 75706 ATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGT 75765 |||||||||||||| ||||| ||| || || | || ||||| ||||| || Sbjct 786 ATGAGGATTAACAACAAAGAATTCACCACTTAAAACACGTCTGTAATAAATGTTACTTGT 845 Query 75766 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825 ||||||||| | |||||||| ||||| |||||||| | |||||||| || |||||||| Sbjct 846 ATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAAGCTGTTGGCATAGG 905 Query 75826 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 75885 ||| | | | | |||||| | || ||| | || ||||| | ||||| | | ||| Sbjct 906 TGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTTTTTAATAAATCCCA 965 Query 75886 ATCCCAA-AGATCTGATGGTACAA---CATCCCAGAGATCGTATTGTAGAATTCCGTTGC 75941 ||||||| | | | || ||| ||| ||| | ||| |||||| ||||| | || Sbjct 966 ATCCCAATATTTATTATC-TACTTTTGCATTCCACATATCAAATTGTAATATTCCTTGGC 1024 Query 75942 TAGCATATGATCCATTATATGTTTCGTAAG-TCC-CGTCCTTTTCAGCTAGTTCGCAACT 75999 | || || | ||||| ||| || | ||| | | ||| | || | ||| | Sbjct 1025 TTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGT--GCCAATTCAACAGA 1082 Query 76000 CGCCTCTAACGCACCGTAATAAATTGTTTCGAAAAT-CTTCTTATTAAGATCTTGCGCTT 76058 | ||||| ||| | ||||| || ||||| || || ||||| |||| |||| |||| Sbjct 1083 CATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATTTAAT-TCTTTAGCTT 1141 Query 76059 CAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAA 76118 | | ||| | ||||| |||||| ||||||| |||||||| ||| || ||||| | Sbjct 1142 CTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCCTA 1201 Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178 | ||||||||||||||||| ||||| || |||| |||||| || || |||||||| Sbjct 1202 TTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAACTGGATAATAATTTC 1261 Query 76179 TATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAA 76238 | || |||||||||| | |||||| || | |||| | || | || ||| || Sbjct 1262 TTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATATAATTTTTTAA 1321 Query 76239 AATCAAA-----TTTTCCATCTATC-ACAAA----CATATTAAGAGCTATAGATGCTAGA 76288 ||| ||| |||| |||||| ||||| |||| | || || || |||| | Sbjct 1322 AATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAAT----GCAATGGAAGCTAAA 1377 Query 76289 TTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTA 76348 |||||||| ||||| |||| || | ||||| || || || ||| |||||| Sbjct 1378 TTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATTAATTACTG 1437 Query 76349 CACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGA 76408 || || || ||||| | ||||| ||| || || ||||||| || ||||| | Sbjct 1438 CATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCATCTTTATATAAC 1497 Query 76409 ACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCT 76468 | | | || |||||||| || || | || | ||||| | || || | | || Sbjct 1498 ATATATGGTACACCAGTTTCTATTTG-GCTTTG-TAATA---TAGCAAACCCATAAATCT 1552 Query 76469 TTT---ATTATAGATTTGTATC----GCTTCTCTCTTTCATATTGTGTATATAA-CCGTT 76520 | | | || | ||| | || | || ||| ||| |||| ||||||||| || Sbjct 1553 TGTGCAAGAATTGTTTTTTTTCCCAAGATTTTCTTCTTCGTATTTTGTATATAATTTTTT 1612 Query 76521 CAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA-CATCAATGAC 76579 ||||||| || ||||| ||| || || |||||||| || || || ||| || | | Sbjct 1613 CAAATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCACCATTAAAGTC 1672 Query 76580 CACTCACCATCTTCCTTAAC-CCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 || | || |||||| || | ||||||||| | |||||||| ||| | |||| ||| Sbjct 1673 CAGTTCTTATTTTCCTTTACTCTTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAA 1732 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698 || ||| || | ||| |||||| || || ||| ||| | | ||||| || || | Sbjct 1733 TAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAA 1792 Query 76699 AATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCC 76758 |||||| |||||||||||||| | ||||| | || || | | || ||| | || || Sbjct 1793 AATATCTGAATGCCATGGTTCAACATATA-CAGCAAAAGAACTTTTCTTTTCCT-CCACC 1850 Query 76759 CTGATCTATATATCTGGCAGTGTTATTATAAACT 76792 ||||||| |||||| || || | |||| ||||| Sbjct 1851 TTGATCTACATATCTTGCTGTATAATTAAAAACT 1884 >seq3686 Length=1345 Score = 219 bits (242), Expect = 6e-52 Identities = 400/576 (69%), Gaps = 20/576 (3%) Strand=Plus/Plus Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 |||||||| |||||| || | ||||||||||||||||| ||||| ||| |||| Sbjct 607 ATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAAT 666 Query 46684 GTGAGCCCAGGCA--TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 || | ||| | | ||| | | ||||| | ||||||||| || ||| |||| Sbjct 667 GTTAAACCATGTAATTTATTTT--GTTTTTTAAACCAAAATATTGCACAAAAACTTCCAC 724 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTG---GCAT 46798 ||| ||||| ||||| ||| || || |||| ||| || | || | | || Sbjct 725 TAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTAT 784 Query 46799 CATTATGAATCCACCTTTGAGC--CCAATCAGCCTTT-TTCTTTACACAAGGCATTGTTT 46855 |||| ||||| || ||| || || | |||| || |||| || || ||| Sbjct 785 CATTT---ATCCA---TTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTT 838 Query 46856 CTATAGCATTAAAGAGAAAGtttttttCA-TCACT-ATCTTTAACATATGTATCTATTAA 46913 | ||||||| ||| | || || | || | || ||| ||| ||| |||| ||||| Sbjct 839 CAATAGCATGAAATA--AATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAA 896 Query 46914 AAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCT 46973 | |||||| |||| || || || ||||||| ||| || ||||| | ||||| | | Sbjct 897 TAAACTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTT 956 Query 46974 TGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCC 47033 |||||| | || ||||| ||| | ||||| || ||||| || |||||||| Sbjct 957 GGCTTCAATTATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCC 1016 Query 47034 ATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAG 47093 ||||||||| ||||||||||| | |||||||| ||||||| |||||||| | | | Sbjct 1017 ATCACTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAA 1076 Query 47094 TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGC 47153 ||| | |||| || | ||| |||||| ||||| ||||||||| ||||| ||||| || Sbjct 1077 TTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGC 1136 Query 47154 CTCTGCTTTTTTATACATATTCCATATATCACGATA 47189 ||| ||||||||||| | |||||||| ||| |||| Sbjct 1137 CTCAGCTTTTTTATAAAAATTCCATACTTCAGGATA 1172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712839134140800