Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq4327 100 2e-16 >seq4327 Length=1153 Score = 100 bits (110), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 111092 GTTTA--AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAAC 111149 ||||| ||||||||||| ||||| ||||| || ||||| ||||| || || | || Sbjct 734 GTTTACGAAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGT 675 Query 111150 GGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCC 111209 ||||| ||| | ||| | || ||| |||||| || |||||||| |||| Sbjct 674 TGAACCATCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCC 615 Query 111210 CGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGC 111269 | ||||||||||| | |||| || || |||||||| |||||| | ||| | | Sbjct 614 CCCTGATCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATC 555 Query 111270 CGATTATAATATACAAAAAGAATCTACACTACATTTAGT 111308 || ||||| || |||||||| || || ||||||| || Sbjct 554 TGACTATAACATTCAAAAAGAGTCAACCTTACATTTGGT 516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421756244591440