Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq3686 230 2e-55 >seq3686 Length=1345 Score = 230 bits (254), Expect = 2e-55 Identities = 570/848 (67%), Gaps = 49/848 (6%) Strand=Plus/Plus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||||||||| ||||||||| || |||| | |||| || |||||||| || || | Sbjct 309 CATAACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTG 368 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATAT--ACAGCTTT---- 23318 ||| ||||| ||||| || ||||||||| | || || | | |||| Sbjct 369 TAAAGATATTAAGTCCATCCAACTAAATGGATT-----TTTTGAATGGAAAACTTTGGAG 423 Query 23319 --ACATGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAA 23376 || | | |||| ||| | | ||| || ||||||||||| |||||| |||| || Sbjct 424 CAACCTAAACATTC---TAATAATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAG 479 Query 23377 TCAT-AGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAAT 23435 || | | || || || |||| | || | | ||| | | ||| | |||| | Sbjct 480 TCTTGAATTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTAC 539 Query 23436 GGAAACAGCATCTTTAATTAT---TTGAACAATAACTTCTTCACTAGGTGGATATTTT-- 23490 ||| || ||||||| ||| |||||||| ||||| || | |||||| Sbjct 540 TTCAACTGCTTCTTTAACTATATTTTGAACAACCTCTTCTGG--TAATT---TATTTTCC 594 Query 23491 AAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAAT 23550 || | || | | |||||| |||||| |||| |||||||| |||||||||||| Sbjct 595 AACAAGCTATAAATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAAT 654 Query 23551 TCATTAGAAAATGTTAATCC-TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGC 23609 |||||| ||||||||| || || ||| || | ||||||||| ||||||||||||| Sbjct 655 TCATTACTAAATGTTAAACCATGTAATTTATTTT-GTTTTTTAAACCAAAATATTGCACA 713 Query 23610 AAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAA 23669 ||| ||| ||| || || || || ||| ||| || |||| | | | |||| Sbjct 714 AAAACTTCCACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAA 773 Query 23670 TGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTC 23729 | || |||| |||||||| || ||| | | ||| | |||| || Sbjct 774 AGAG---TTCGTATCATTTATCCATTTAGCTGCCCA-TAATGCTTTATTTTTTATTGCTG 829 Query 23730 A-ATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCT-TCATT---ATCTGTTATATAT 23784 || ||||||| || | || | || ||| ||| || || ||| | ||||| Sbjct 830 GTATATTTTCAATAGCAT----GAAATAAATTTAATCTCTCTTTCTCATCCCTAATATAA 885 Query 23785 GTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCA 23844 ||||||||| ||||||||| ||||||| || |||||||||| ||| || ||||| || Sbjct 886 TTATCAATTAATAAACTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCA 945 Query 23845 TAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCG 23904 ||||| | | |||||| | ||| || || | |||||| | ||||||||||||| Sbjct 946 TAAAACTTTTTGGCTTCAATTATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCT 1005 Query 23905 TTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA 23964 || || ||||||||||| ||||| || || || |||| ||||||||||||| ||||| Sbjct 1006 AATACTATTCCATCACTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCA 1065 Query 23965 T---CAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACT 24021 | || | |||||||| | || || | ||| |||||||||| | ||| ||| | Sbjct 1066 TTTACATT---TAATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCA 1122 Query 24022 GTCCAAAA 24029 |||||||| Sbjct 1123 GTCCAAAA 1130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521418316166000