Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq76 122 1e-22 seq252 116 5e-21 >seq76 Length=8655 Score = 122 bits (134), Expect = 1e-22 Identities = 132/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 155871 TTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAATTCCAAC 155930 ||||| ||||||| || || | || || ||||||| ||||| || | ||||| || Sbjct 6548 TTTAATATTTGAATTCGACCTTCTTTATTGGGTAATGATATTTCAATATGTAATTCAAAT 6607 Query 155931 CGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATT 155990 || || |||||||| |||||||| || ||||| || |||||| |||||||| || | | Sbjct 6608 CGACCTGGTCTTAACAATGCTTCATCGATTAAATCTATTCTGTTTGTCATACCAATTAAT 6667 Query 155991 AAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACTA 156045 | || || |||||| | ||| || |||||||| || ||||||||||| |||| Sbjct 6668 AGTATATTATTTAAACTATTTACTCCATCTATTTTTGATAATAATTGATTAACTA 6722 >seq252 Length=6430 Score = 116 bits (128), Expect = 5e-21 Identities = 269/395 (68%), Gaps = 18/395 (5%) Strand=Plus/Minus Query 50478 GATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAAT-TG 50536 || ||||| || ||||||| ||||||||||| || ||||| || || | | || || Sbjct 5457 GACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCTGAATATACAGATATG 5398 Query 50537 CGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACG-TTGA 50595 | | | |||| ||| | |||| || ||||| | |||| ||||||| || | Sbjct 5397 C-ATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATATTATAAATTTAATTAA 5339 Query 50596 AAACAAACCCCGACGATCGGCGTATT--TTAATGACCGCCTGGAATCCAACCGATATAGA 50653 |||| | || | | | | || ||| || ||| || |||||| || ||| |||| Sbjct 5338 AAACGATCCGACATG-TAGACGAATTATTTTATGT--GCATGGAATGTAAAAGATTTAGA 5282 Query 50654 TCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATG----CCACAGACAATG 50709 ||||| | |||||||| |||||| |||||||||||||||||| | || || Sbjct 5281 TCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAA-- 5224 Query 50710 TTTTATCCTGT-CAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAAC 50768 ||||| ||| ||| ||||||||||| |||| | ||| | || ||||| ||||| Sbjct 5223 --TTATCATGTATTATG-TATCAAAGATCTTGTGATTTAGGTCTTGGTGTTCCATTCAAT 5167 Query 50769 GTAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCAAGCCGTCGATATGAAACCGGGA 50828 | ||||| || || |||| || ||| |||| || |||| || | |||| | Sbjct 5166 ATTGCTTCCTATTCTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCAGCT 5107 Query 50829 GAATTTATTCATACGTTAGGAGACGCTCATATTTA 50863 |||||||| ||| || ||| | |||||| |||| Sbjct 5106 GAATTTATACATGTATTGGGAAATGCTCATGTTTA 5072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666986062076400