Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq10 114 1e-20 >seq10 Length=1559237 Score = 114 bits (126), Expect = 1e-20 Identities = 557/868 (64%), Gaps = 35/868 (4%) Strand=Plus/Minus Query 15901 AACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAA 15960 |||||| | |||| ||||| ||| | ||||| ||||| || |||||||| | ||| Sbjct 1415807 AACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAA 1415748 Query 15961 AGATATATTTTCCATAAAATCAAAGGGATTAGTAGC-TGAAAATATCTTAGAGTACCCCA 16019 |||||| ||||| || ||| ||||| | | || ||| | || ||| | || | Sbjct 1415747 AGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAAACT-TTGGAGCAACCTA 1415689 Query 16020 G---TTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGC-AA 16075 ||| ||| ||||| ||| || |||||||| || |||||| |||| ||||| || Sbjct 1415688 AACATTC--TAA-TAATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAA 1415633 Query 16076 TTAATTCCTAT-AAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAAC 16134 || ||||| || || || | | || || || | |||| | ||||| |||| Sbjct 1415632 TTCATTCCAATTAAATCACAAGGTAA-AGATTCACAAATAAATGATCTTTCTACTTCAAC 1415574 Query 16135 CGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAA 16194 |||||||||| |||| | ||| | | | ||| | || || | Sbjct 1415573 TGCTTCTTTAACTATATTTTGAACAACCTCTTCTGGCAATTTATTTTCTAACAAGCTATA 1415514 Query 16195 CATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAA 16254 |||| ||| || || |||| |||||| ||||| || || | ||| || ||| Sbjct 1415513 AATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAA 1415454 Query 16255 AGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGA 16314 ||||| || | | ||| | |||| || ||||| ||||| ||| ||| || Sbjct 1415453 TGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACT 1415394 Query 16315 AAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACG---TAGCATC 16371 ||| ||||| || || ||| ||||| ||| | | || ||| || | | | | ||| Sbjct 1415393 AAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATC 1415334 Query 16372 TTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC 16431 || |||||||| | ||||| ||||| | |||||| || |||| Sbjct 1415333 GTTT------ATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTC 1415280 Query 16432 TATGGCCTTAAACAATTT----CTCTTTTTCCTGAATATCGATTATATACGTATCAATCA 16487 || || | ||| || || |||| |||| ||| | ||||| ||||||| | Sbjct 1415279 AATAGCATGAAATAAATTTAATCTCTCTTTCTC----ATCCCTAATATAATTATCAATTA 1415224 Query 16488 GTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATC 16547 |||||| || |||| |||||||| || || | ||||| ||||| |||| || | Sbjct 1415223 ATAAACTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTT 1415164 Query 16548 GAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTC-CGCCAGGTTCTCATTCACGATA 16606 || || ||||||||||| | | ||||| | | || | || || || || Sbjct 1415163 TGGCTTCAATTATTTGTACTT-CTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATT 1415105 Query 16607 CCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTC-GTCAGATGT 16665 || ||||| || |||||||| || | | || || || |||| |||||| | | || | Sbjct 1415104 CCATCACTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTT 1415045 Query 16666 AAGAATATGCCAA-TCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGC 16724 | | | | | || ||||| ||||| | |||| ||| | |||||| | |||||||| Sbjct 1415044 A--ATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATG 1414987 Query 16725 TAGCCACTGCCTTTTTATACATTTTCCA 16752 ||| | || |||||||| | ||||| Sbjct 1414986 AGGCCTCAGCTTTTTTATAAAAATTCCA 1414959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511411561650080