Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq7 163 2e-35 >seq7 Length=1041357 Score = 163 bits (180), Expect = 2e-35 Identities = 377/561 (67%), Gaps = 8/561 (1%) Strand=Plus/Minus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 ||||||| ||| | ||| ||||| || | || || |||| || || || ||| Sbjct 912523 TGAGCATTTCCCAATACATGTATAAATTCAGCTGGTTGTAAATTACATACTTGTGCTATC 912464 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 || | || || | ||||||| |||||| || ||||| || || | || | |||| Sbjct 912463 ATATATGTAAATATAGAATAGGAAGCAATATTGAATGGAACACCAAGACCTAAATCACAA 912404 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACA 101887 ||||||||||||| ||| || | ||||||||| | ||||||||||||| ||| | | Sbjct 912403 GATCTTTGATACATAATACATGATAATTTTCCATCAAAAACATAAAATTGACATAAAATA 912344 Query 101888 TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATC 101947 |||||||| || || |||||| | | ||| |||||||| ||||| | | || Sbjct 912343 TGACAAGGAGGTAATGCCATTTGATCTAAATCTTTTACATTCCATGCACATAAAATAATT 912284 Query 101948 CTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCT 102007 | |||| ||| || | |||| || || || | | |||||| || ||||| ||| Sbjct 912283 CGTCTACATGTCGGATCGTTTTTAATTAAATTTATAATATTTTTTAACTGATCAACACCT 912224 Query 102008 TCTCCTTTATAATC-GCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAA 102066 | |||||||||| || | | | || ||||||| || || || |||||||| ||||| Sbjct 912223 TTATCTTTATAATCAGCATGC-ATATCTGTATATTCAGCACCAAAGTGCCTCCATTGAAA 912165 Query 102067 TCCATACACAGGTCC-AAG--ATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAA 102123 ||| || | || || ||| || |||| ||| || |||| || | |||||||| Sbjct 912164 TCCGTAAATTGGACCTAAGTCATTAACTTC-TCTATGAAATAATTTCCTA--TTATCTAA 912108 Query 102124 AAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCT 102183 ||| ||| | ||||| || ||||| || ||| | || ||| || | Sbjct 912107 AAACTCTCTTGTCCCATTAGCTTCCCATATTCTTACGTTTTTTTCTAATAATGTATTTCC 912048 Query 102184 GTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCT 102243 | || ||| || |||||||| | || ||||||| | |||||| ||||| | | Sbjct 912047 ATTTGTTTCTCCCCTTATAAACCATAGCAACTCTTCAATGATACCTCTTACAAATAATTT 911988 Query 102244 CTTAGTAGTTAAAAGTGGAAA 102264 || || ||||| | |||||| Sbjct 911987 TTTTGTTGTTAATAATGGAAA 911967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361249245179444