Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6 381 7e-101 seq10 187 3e-42 >seq6 Length=837512 Score = 381 bits (422), Expect = 7e-101 Identities = 1008/1525 (66%), Gaps = 37/1525 (2%) Strand=Plus/Minus Query 53137 ATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 53196 ||| |||||||| || |||||| ||| || || | | ||||| ||||| || Sbjct 430680 ATGAGGATTAACAACAAAAAATTCACCACTTAAAACACGTCTGTAATAAATGTTACTTGT 430621 Query 53197 ATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 53256 ||| ||||| | || ||||||||||| |||||||| | ||||| || || |||||||| Sbjct 430620 ATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGCGACGTTGAAGCTGTTGGCATAGG 430561 Query 53257 TGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCA 53316 ||| | | | | |||||| | || | | | || ||||| | ||||| ||||| Sbjct 430560 TGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTTTTTAATAAATCCCA 430501 Query 53317 ATTCCAAAGATC-----CGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTA 53371 || |||| | |||| | | ||||| || || | Sbjct 430500 ATCCCAATATTTATTATCGACTTTTG--CATTCCACATATCAAATTGTAATATTCCTTGG 430443 Query 53372 CTGGC-GTACGATCCTACATATGTATCGTATGGTCC--TTCCTTCTCAGCTAGTTCACAA 53428 || || | || | ||| ||||| || |||||||| || ||| | || | |||| | Sbjct 430442 CTTGCTGGACTA-CCTTGATATGATTCATATGGTCCACTTACTTGT--GCCAATTCAACA 430386 Query 53429 CTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATTTAGATCTTGTGC 53487 | ||||| ||| | ||||| || ||||| || || ||||| ||||| |||| || Sbjct 430385 GACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATTTAATTCTTTAGC 430327 Query 53488 TTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 53545 ||| ||| | || ||||||| |||| || ||||| | |||||||||||||| || Sbjct 430326 TTCTTCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACT 430269 Query 53546 CCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAA 53605 || || || |||||||||||||| ||||| || |||| |||||| || ||||||||| Sbjct 430268 CCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAACTGGATAATAA 430209 Query 53606 TTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTG 53665 || | || |||||||||| | ||||| ||| | ||| | ||| | | ||| Sbjct 430208 TTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATATAATTTT 430149 Query 53666 AGAAAATCAAA-----TTGTCCATCTAT-TACAAACATGTTCAATGCAATAGATGCCAGA 53719 ||||| ||| || | ||||| ||||| || |||||||| || || | | Sbjct 430148 TTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATGGAAGCTAAA 430089 Query 53720 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 53779 |||||||| ||||| |||| || | ||||| || || ||| || | |||||| Sbjct 430088 TTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAAATTACTG 430029 Query 53780 CACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 53839 || || || ||||||||||||| |||||| || ||||| ||||| ||||| | Sbjct 430028 CATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCATCTTTATATAAC 429969 Query 53840 ATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCC 53899 || |||| ||||||||| || ||| || || || || ||| | | | || Sbjct 429968 ATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAATCTTGTGC- 429910 Query 53900 TTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAAC 53956 | || | ||| | || |||||| ||||||| |||||| ||| |||||| Sbjct 429909 --AAGAATTGTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGTATATAATTTTTCAAAT 429852 Query 53957 TCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCT 54016 || || ||||| | || || |||||||||| || ||||| || | ||| | Sbjct 429851 TCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCATTAGGGCACATTAAAGTCCAGTTC 429792 Query 54017 CCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCT 54076 | ||||| |||| ||||||||| | |||||| | ||||| ||| ||||| ||| Sbjct 429791 TTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCA 429732 Query 54077 CTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCA 54136 | | ||| ||| || || || ||| ||| | | ||| | || | | |||||| Sbjct 429731 CGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCT 429672 Query 54137 GAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCT 54196 |||||||| ||||| | |||| | | | || | ||| ||| || |||||| Sbjct 429671 GAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCT 429612 Query 54197 ATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCA 54256 | ||||| || || | |||| ||||||| ||||| || | | |||||| ||| |||| Sbjct 429611 ACATATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCATTTGATATACCA 429552 Query 54257 TTGGTCCCGGAGATAT-AGCTTCCACTG-GCACGAATATTACTAATTGATAGACCTATCC 54314 || || || ||| | || | || || | ||||| | | | |||||| | Sbjct 429551 TTAGTTCCTCTGATGTAAGAAT--TTTGAGCTCTAATATCTTGTACAGCCACACCTATAC 429494 Query 54315 CCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATAC 54374 | ||||| ||||| || ||||| ||| | ||||| || ||| | || || ||||| Sbjct 429493 CTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTG 429434 Query 54375 TATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 54433 |||| ||| || ||| || ||| || |||||||||| | | ||||||| | Sbjct 429433 AATCAGATTTCATTGATAA-TAAAAAGCATGAAGACATTTGGGGTCTTGGTGTTCCCGAA 429375 Query 54434 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCG 54493 |||||||| ||||||| ||| || ||||| |||||| || | || || || || || Sbjct 429374 TTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAATGATAAGTTTCT 429315 Query 54494 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 54553 | ||| || | ||| | ||| ||||||| | || | |||||| | |||||| Sbjct 429314 AAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATAAATGCTGA 429255 Query 54554 GGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAA 54613 || | ||||| || || || || || | ||||| || |||| || |||||||| Sbjct 429254 GGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAATGTTTTAAAT 429195 Query 54614 CCAAAATAGTTGTATGAAAAGTCTC 54638 |||||||| | ||| ||| |||| Sbjct 429194 CCAAAATAATCGTAATTAAAATCTC 429170 >seq10 Length=1559237 Score = 187 bits (206), Expect = 3e-42 Identities = 378/556 (68%), Gaps = 4/556 (1%) Strand=Plus/Minus Query 24141 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 24200 ||||| ||||| || || ||||||||||| ||||| || ||| || | || | Sbjct 1415500 AAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGT 1415441 Query 24201 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 24260 | | | ||||||| ||||||||| | ||| |||| ||| || |||||| Sbjct 1415440 AATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCT 1415381 Query 24261 TCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTT 24320 || || ||| || | || |||||| || || | | || | |||||| || Sbjct 1415380 TCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCGTTTATCCATTTA 1415321 Query 24321 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 24380 ||||| || || ||||||| || || | || ||||||| ||| | || Sbjct 1415320 GCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTT 1415261 Query 24381 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 24440 | | || || ||| ||| ||| ||||||| || | |||||| |||| || || Sbjct 1415260 AATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGT 1415201 Query 24441 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 || ||||||| || |||||||| | || || | | || || | || ||||||||| Sbjct 1415200 ATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCT 1415141 Query 24501 ATACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 24559 | ||||| | || ||||||||||| |||||||| ||||| ||||||||||| || Sbjct 1415140 CTTAAAAATT-TACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGC 1415082 Query 24560 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATAT 24618 | |||||||||||||||| |||||| | | ||| ||| ||| || || || | || Sbjct 1415081 TAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAAT 1415023 Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678 | | |||| ||| | |||||| | ||||||||||| ||||| || |||||||| | || Sbjct 1415022 CACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAAT 1414963 Query 24679 TCCAGATGTCATGATA 24694 |||| | ||| |||| Sbjct 1414962 TCCATACTTCAGGATA 1414947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718304845120