Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 >seq6 Length=837512 Score = 104 bits (114), Expect = 2e-17 Identities = 111/145 (77%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| |||||||||||| | || |||||||||||| | || ||||| || ||| Sbjct 386578 AAAATTCAAGATAAAGAAGGTATTCCTCCTGATCAACAAAGATTAATTTTTGCCGGAAAA 386637 Query 25179 CAATTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTC 25236 ||||| |||||| | || ||||| | || ||||| |||||||| ||||| ||| | | Sbjct 386638 CAATTAGAAGATGGTAGAACACTAT--CTGACTACAACATTCAAAAAGAATCGACTTTAC 386695 Query 25237 ACATGGTGTTACGATTACGAGGAGG 25261 || | || ||| ||||| ||||||| Sbjct 386696 ACTTAGTTTTAAGATTAAGAGGAGG 386720 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| || || || ||||| ||||| || ||||| | Sbjct 386266 ATGCAAATCTTTGTAAAAACTTTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCT 386325 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || |||||| |||||||||||| | || |||||| Sbjct 386326 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCTGATCAA 386385 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | || || || || |||||||| || ||| | ||| | | |||||||| Sbjct 386386 CAAAGATTAATTTTCGCTGGAAAACAATTAGAGGATGGAAGAACACTATCTGATTACAAC 386445 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| |||||||| | ||| | || ||| ||||| ||||||| Sbjct 386446 ATTCAAAAAGAATCTACCTTACACTTAGTTTTAAGATTAAGAGGAGG 386492 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | |||||||| || || ||||| ||||| || ||||| || Sbjct 386722 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 386781 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | || |||||| |||||||||||| | || |||||| Sbjct 386782 GATACTATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAA 386841 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | || || || || |||||||| ||||| | ||| | | || || || Sbjct 386842 CAAAGATTAATTTTCGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGACTATAAC 386901 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| |||||||| | || | || ||| ||||| ||||||| Sbjct 386902 ATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGG 386948 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| |||||||||||| | || |||||||||||| | || ||||| || || Sbjct 386122 AAAATTCAAGATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTTGCTGGAAAG 386181 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||||| ||||| | ||| | | || || || |||||||| |||||||| | || Sbjct 386182 CAATTAGAAGACGGTAGAACATTATCTGACTATAACATTCAAAAAGAATCTACCTTACAT 386241 Query 25239 ATGGTGTTACGATTACGAGGAGG 25261 | || ||| ||||| ||||||| Sbjct 386242 TTAGTTTTAAGATTAAGAGGAGG 386264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410794577075816