Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq7 149 4e-31 >seq7 Length=1041357 Score = 149 bits (164), Expect = 4e-31 Identities = 350/524 (67%), Gaps = 6/524 (1%) Strand=Plus/Minus Query 96997 AACTTTAGTGTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCAT-CAAT 97055 || || || || |||||||| ||| |||| | | ||| || | | ||| | ||| Sbjct 912598 AATTTAAGAGTAGGGAAAGGATAGGGTGTTCTATTTAACTGGACTTTTA-AGCTTTCAAC 912540 Query 97056 GTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATC 97115 ||||| ||||| ||||||| ||| || || |||||||| | || ||||| Sbjct 912539 ATGATTATTATAAACATGAGCATTTCCCAATACATGTATAAATTCAGCTGGTTGTAAATT 912480 Query 97116 AGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCC 97175 | || || || |||||| | || |||| ||||||| |||||| || || || || || Sbjct 912479 ACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAATATTGAATGGAACACC 912420 Query 97176 TAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATA 97235 || || | |||| ||||||||||| | ||| || | ||||||||| | ||||| Sbjct 912419 AAGACCTAAATCACAAGATCTTTGATACATAATACATGATAATTTTCCATCAAAAACATA 912360 Query 97236 AAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCA 97295 ||| |||| || | |||||| || || || ||||||| | |||| |||||||| Sbjct 912359 AAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAATCTTTTACATTCCA 912300 Query 97296 AGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTT 97355 ||||| | | |||| |||| || || | | | || ||| || || | || Sbjct 912299 TGCACATAAAATAATTCGTCTACATGTCGGATCGTTTTTAATTAAATTTATAATATTTTT 912240 Query 97356 TAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAA 97415 ||| |||||||| |||| | ||||| | | | || |||||| || ||||| Sbjct 912239 TAACTGATCAACACCTTTATCTTTATAATCAGCATGCATATCTGTATATTCAGCACCAAA 912180 Query 97416 ATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAA--A 97473 ||||||||||| ||||| |||| || || | ||| ||||||||| | | || Sbjct 912179 GTGCCTCCATTGAAATCCGTAAATTGGACCTAAGTCATTAACTTCTCTATGAAATAATTT 912120 Query 97474 CCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAAT 97517 || | ||||||||| | || | ||||| || ||||| || Sbjct 912119 CCTA--TTATCTAAAAACTCTCTTGTCCCATTAGCTTCCCATAT 912078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346782123465080