Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq7 304 2e-77 seq6 194 3e-44 seq11 185 1e-41 >seq7 Length=1041357 Score = 304 bits (336), Expect = 2e-77 Identities = 513/732 (70%), Gaps = 17/732 (2%) Strand=Plus/Minus Query 205368 TTTTAATCCATTAATATGATTAACATATATATGTGCATTACC-AATATTATGAATAAATT 205426 |||||| | | || ||||||| ||| | ||| ||||| || |||| ||| ||||||| Sbjct 912554 TTTTAAGCTTTCAACATGATTATTATAAACATGAGCATTTCCCAATAC-ATGTATAAATT 912496 Query 205427 CATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAA 205486 || ||||| ||||||| || ||||| |||||||| || |||| | ||| ||||| Sbjct 912495 CAGCTGGTTGTAAATTACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAA 912436 Query 205487 CATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGAT 205546 ||| ||||| ||||| | ||| | |||| |||||||||||||| ||||| | Sbjct 912435 TATTGAATGGAACACCAAGACCTAAATCACAAGATCTTTGATACATAATACATGATA--- 912379 Query 205547 ATTTATTATTAATTACATGAAATTGTACA-AAACAATGACAAGGTGGTATAACCATATTT 205605 |||| || || |||| |||||| ||| ||| ||||||||| |||| |||| | Sbjct 912378 ATTTTCCATCAAAAACATAAAATTG-ACATAAAATATGACAAGGAGGTAATGCCATTTGA 912320 Query 205606 TCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttatttttt 205665 || | |||| | |||||| || ||| || || |||| || || | ||||| Sbjct 912319 TCTAAATCTTTTACATTCCATGCACATAAAATAATTCGTCTACATGTCGGATCGTTTTTA 912260 Query 205666 attttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATA 205725 ||| ||||||||||| | |||| ||||||| |||| || | |||||| | || |||| Sbjct 912259 ATTAAATTTATAATATTTTTTAACTGATCAACACCTTTATCTTTATAATCAGCATGCATA 912200 Query 205726 TCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCT 205785 || |||||| ||||||||| || | ||||||||| || |||| ||||||||| ||| Sbjct 912199 TCTGTATATTCAGCACCAAAGTGCCTCCATTGAAATCCGTAAATTGGACCTAAGTCATTA 912140 Query 205786 TCTTTTCTATCATTAAAACCACGtttttttatatattttaatgatccattttcatcccaa 205845 ||| ||||| | || | || | || | | | | || ||||| | |||| Sbjct 912139 ACTTCTCTATGAAATAATTTCCTATTATCTAAAAACTCTCTTGTCCCATTAGCTTCCC-- 912082 Query 205846 atatggattcctttattttttaGAA--TATTTGTATTAGTTGATCCAGATATAAACCATA 205903 |||| | | ||| ||| | | || ||||| ||| ||| ||| ||||||||||| Sbjct 912081 ATATTCTTACGTTTTTTTCTAATAATGTATTTCCATTTGTTTCTCCCCTTATAAACCATA 912022 Query 205904 ATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAAT 205963 || ||||||| || ||||| ||| | | ||||||||| ||||||||||| | | Sbjct 912021 GCAACTCTTCAATGATACCTCTTACAAATAATTTTTTTGTTGTTAATAATGGAAAATATT 911962 Query 205964 CATCTAATTTATATTTCATAGTTAAACCATATACAGTTTTTGTATCTACACCTGTTCTAT 206023 || ||| ||| ||||||| | | ||| || | || | | | ||||||||||||| Sbjct 911961 CACTTAAATTAAATTTCATCATATATCCAAATTTACTTAATACACCAACACCTGTTCTAT 911902 Query 206024 --TTTTGGTTATTCTTCCATTAGATAATATTTCTGATATACCTTTTAAATATTGATATTC 206081 | ||| |||| |||||| || ||| || |||| | ||||||||||||||||| Sbjct 911901 CATCTTGTTTAT--TTCCATGCATTATTATATCATATATGACATTTAAATATTGATATTC 911844 Query 206082 ATCTGATGATGT 206093 | |||||||| Sbjct 911843 A--GGATGATGT 911834 >seq6 Length=837512 Score = 194 bits (214), Expect = 3e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| |||| || |||| || ||||| || ||| | || ||||| || | Sbjct 386266 ATGCAAATCTTTGTAAAAACTTTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCT 386325 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||||||||||||||||||||||| |||||||||||| Sbjct 386326 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCTGATCAA 386385 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | ||||| || |||||||||||||||||| | ||||| || ||||| || Sbjct 386386 CAAAGATTAATTTTCGCTGGAAAACAATTAGAGGATGGAAGAACACTATCTGATTACAAC 386445 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| || || || || |||||| | ||| |||| ||||| Sbjct 386446 ATTCAAAAAGAATCTACCTTACACTTAGTTTTAAGATTAAGAGGAGGTAT 386495 Score = 187 bits (206), Expect = 4e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || |||| ||| |||| || ||||| || ||| | || ||||| || Sbjct 386722 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 386781 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | ||| ||||||||||||||||||||||| |||||||||||| Sbjct 386782 GATACTATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAA 386841 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | ||||| || |||||||||||||| || || |||||||| || ||||| Sbjct 386842 CAAAGATTAATTTTCGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGACTATAAC 386901 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||||||||| || || ||||| |||||| | ||| |||| ||| Sbjct 386902 ATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGGT 386949 Score = 185 bits (204), Expect = 1e-41 Identities = 190/247 (77%), Gaps = 1/247 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || |||| || |||| || ||||| || ||| | || |||| || | Sbjct 386494 ATGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATCACTCTTGATGTTGAGCCATCT 386553 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||||||||||||||||||||||| || ||||||||| Sbjct 386554 GATACCATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCTGATCAA 386613 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| |||||||||||||| ||| || ||||| || || || || Sbjct 386614 CAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAAC 386673 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 |||||||||||||| ||||| || || |||||| | ||| |||| ||||| ||| ||| Sbjct 386674 ATTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGGTATGCAAATTTTC 386733 Query 124778 ATAAAAA 124784 |||||| Sbjct 386734 GTAAAAA 386740 Score = 176 bits (194), Expect = 7e-39 Identities = 162/205 (79%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 124564 CAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGA 124623 |||| ||||||||||| | || |||| || ||||| ||| ||| | ||| | Sbjct 386063 CAGGAAAAACTATAACCCTTGATGTTGAGCCATCCGATACCATTGAAAATGTTAAAGCTA 386122 Query 124624 AAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAAC 124683 |||||||||||||||||||||| ||||||||||||||||| | |||||||| ||||| | Sbjct 386123 AAATTCAAGATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTTGCTGGAAAGC 386182 Query 124684 AATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATT 124743 ||||||| || || |||||||| || ||||| |||||||||||||| || || |||| Sbjct 386183 AATTAGAAGACGGTAGAACATTATCTGACTATAACATTCAAAAAGAATCTACCTTACATT 386242 Query 124744 TGGTTTTACGTTTACGAGGTGGTAT 124768 | |||||| | ||| |||| ||||| Sbjct 386243 TAGTTTTAAGATTAAGAGGAGGTAT 386267 >seq11 Length=1651515 Score = 185 bits (204), Expect = 1e-41 Identities = 169/211 (80%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| |||| ||| |||| || ||||| || ||| | || ||||| || Sbjct 1491088 AATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATC 1491029 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||||||| ||| ||||| || ||||| |||||||||||||| || || ||||||| Sbjct 1491028 TGATACAATTGAAAATGTTAAAGCA-AAAATCCAAGATAAAGAAGGAATTCCCCCTGATC 1490970 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||||| | ||||| || |||||||||||||| ||| | |||||||| || |||| Sbjct 1490969 AACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGACTATA 1490910 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 | ||||||||||| ||||| || |||||||| Sbjct 1490909 ACATTCAAAAAGAGTCAACCTTACATTTGGT 1490879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755451807219200