Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq10 284 1e-71 >seq10 Length=1559237 Score = 284 bits (314), Expect = 1e-71 Identities = 627/919 (68%), Gaps = 37/919 (4%) Strand=Plus/Minus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACAT--T 15943 |||||||||| | | || |||||| || | |||||| | | | |||||| || | | Sbjct 1415855 TTAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAAC--ACCTGAT 1415798 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 |||||||| || |||||||||||||||||||||||||||||||| ||| || || Sbjct 1415797 TTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAG 1415738 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAA---TTCCAAC 16060 ||||| || ||| |||||||||||| | ||| ||| || || ||| || Sbjct 1415737 TCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAA- 1415679 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC-AGTTCATTCCTAT 16119 ||||| ||| || |||||||| || || || ||| || || | |||||||| || Sbjct 1415678 --TAATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAATTCATTCCAAT 1415622 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 ||| | | ||| | | ||| | ||| | |||||| | ||| ||||| | | Sbjct 1415621 TAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAAC 1415562 Query 16180 TATATCTCTTACTACACTATTT----AACGGAGGGTTTAATAAGTGTTTAAACATTATAC 16235 ||||| | || || || || || | | ||| ||| || | |||| || Sbjct 1415561 TATATTTTGAACAAC-CTCTTCTGGCAATTTATTTTCTAACAAGC---TATAAATTAAAC 1415506 Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295 || |||||| || |||||||| || ||||| || || || || |||||| | || Sbjct 1415505 AATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAAC 1415446 Query 16296 C-TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 | || ||| | | ||||||||| ||||||||| || ||| ||| ||| ||| Sbjct 1415445 CATGTAATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAAT 1415387 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACG--TTC-TAtttttactt 16411 || ||||| || ||| || || | || ||| | | | ||| ||| || Sbjct 1415386 ATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCGTT---- 1415331 Query 16412 tctatccattttttagcccaatttgcttt-ttgtttAACACAGTTCATGTTCTCTATTGC 16470 ||||||||| ||||| |||||| || |||| | | | || || || || || Sbjct 1415330 --TATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGT-ATATTTTCAATAGC 1415274 Query 16471 ATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATA 16530 || |||||||| | | ||||| ||| ||||||| |||| |||| ||||||||| Sbjct 1415273 ATGAAATAAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATA 1415214 Query 16531 CATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGA 16590 |||| || || ||||| || | ||||| |||||| ||||||| | | ||||| Sbjct 1415213 GGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAAT 1415154 Query 16591 TATTTGTACTTCAGAGTAAAACCTTTCT-GCTAAGTTTTCGTTAACTATTCCATCGCTAG 16649 |||||||||||| ||||| || || ||||| ||||| ||||||||||| |||| Sbjct 1415153 TATTTGTACTTC-TCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAG 1415095 Query 16650 CTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttC-GTTATCTGAAAGTTTTAAC 16708 |||||||||| || || | ||||| ||||||| |||||| ||| | || |||| | Sbjct 1415094 CTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCA- 1415036 Query 16709 CAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCC 16768 |||| ||||| |||||||||| | ||||| |||||||||| || || |||| Sbjct 1415035 AAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCT 1414976 Query 16769 TTTTTATACATTTTCCATA 16787 |||||||| | ||||||| Sbjct 1414975 TTTTTATAAAAATTCCATA 1414957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462509433058400