Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq10 237 2e-57 >seq10 Length=1559237 Score = 237 bits (262), Expect = 2e-57 Identities = 624/934 (67%), Gaps = 29/934 (3%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 ||||||||| | ||| ||||| || | || | | | | || ||||| || |||| Sbjct 1415854 TAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTT 1415795 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| || |||||| ||||||||||| || ||||| |||| | ||||| ||| Sbjct 1415794 TGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAGTCC 1415735 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAG---TTCTAATAGT 14032 || || |||||||||| |||| || ||||| ||||||| |||||||| Sbjct 1415734 ATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAATA-- 1415677 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAG 14091 ||| ||| |||| || ||||| ||||||||||| || || ||||||| || |||| Sbjct 1415676 -ATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAATTCATTCCAATTAA 1415619 Query 14092 TTTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 | ||| | | ||| || |||| | |||||| || || || || | | Sbjct 1415618 ATCACAAGGTAA-AGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTA 1415560 Query 14151 TAATCGTAATAATTTCATTAGAAGGAGGATATTTT---AGATGTTTAAAAATTAAACACG 14207 || | || || || | | | | |||||| | | | | | |||||||||| Sbjct 1415559 TATTTTGAACAACCTCTTCTG--GCAATTTATTTTCTAACAAGCT-ATAAATTAAACAAT 1415503 Query 14208 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-T 14266 |||||| || | || |||||||||||||| | ||| || ||||||||| || | Sbjct 1415502 TAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCAT 1415443 Query 14267 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 14326 | || || | ||||||| ||||||||||||||| || ||| ||| |||||| Sbjct 1415442 GTAATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATT 1415384 Query 14327 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14386 || || || ||| |||| | || ||| |||| || | | ||| |||| Sbjct 1415383 CCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCGTT---TATC 1415327 Query 14387 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14446 ||||| |||||| | ||| ||||| || || |||||||||||| |||| Sbjct 1415326 CATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAAT 1415267 Query 14447 AAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14506 |||| | ||||||| | ||| || ||||||| | ||| ||||| ||||| Sbjct 1415266 AAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCA 1415207 Query 14507 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14566 |||||||| ||||| | |||||| |||||| ||||||| | | ||||| |||| Sbjct 1415206 GAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGT 1415147 Query 14567 ACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14626 || ||| ||||| | || |||||||| ||||| |||||||||||||||||| Sbjct 1415146 ACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAA 1415087 Query 14627 AATGCCA--ATATGTTTTTAATAAAGTATTGC-TCTTCATTGCTGAGTTTTTTCCAA-TC 14682 ||||| | | ||||||| | || || || | | | |||| | | |||||| || || Sbjct 1415086 AATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATT--TAA--TTTTTCAAAGTC 1415031 Query 14683 GGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTT 14742 ||||| | || | ||||| ||| ||| | |||||||| || |||||||||| Sbjct 1415030 TTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTT 1414971 Query 14743 ATACATTACCCATATTTCTTTATATAATATAGGA 14776 ||| | ||||| ||| ||| | |||||| Sbjct 1414970 ATAAAAATTCCATACTTCAGGATACATAATAGGA 1414937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482342922981920