Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq13 87.8 2e-12 >seq13 Length=2459074 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/190 (71%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 73930 ATGGAGATATACTAGTGCTAAATAGACAACCTACTTTACATAAAGCATCAATGATGGCTC 73989 |||| ||||| || | | ||||||||||| |||||||| ||||| ||| || Sbjct 1710983 ATGGTGATATTGTATTATTTAATAGACAACCATCTTTACATCGTATGTCAATTATGTGTC 1710924 Query 73990 TTCGAGTTAAAATTATGGATGTAAAAACCTTTAAATTTAATCT---TGCATGCACTAAAC 74046 | || | | |||||||| ||||| ||| |||||| || ||| | | | Sbjct 1710923 ATAAAGCTCGAGTTATGGATTATAAAACATTTCGCTTTAATGAATGTGTATGTAGT---C 1710867 Query 74047 CATATAATGCAGATTTTGATGGAGATGAAATGAATGCTCATGCGCCTCAATCAGAAGAAA 74106 ||||||||||||| |||||||| |||||||||||| |||| |||||| | |||||| Sbjct 1710866 CATATAATGCAGACTTTGATGGGGATGAAATGAATTTACATGTACCTCAAACCGAAGAAT 1710807 Query 74107 GTAAAGCTGA 74116 || ||| || Sbjct 1710806 CTAGAGCAGA 1710797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679810627030080