Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6 390 1e-103 seq10 172 7e-38 >seq6 Length=837512 Score = 390 bits (432), Expect = 1e-103 Identities = 981/1477 (66%), Gaps = 33/1477 (2%) Strand=Plus/Minus Query 62421 TAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62480 ||||| ||||| ||||| ||||| | || ||||||||||| |||||||| | ||||| Sbjct 430634 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGCGACGTTGAA 430575 Query 62481 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 62540 || || ||||||||||| | | | | |||||| | || | | | || ||||| | | Sbjct 430574 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTT 430515 Query 62541 TTTAGATGTTCCCAATTCCAAAGATC-----CGACGGTACAACANNNNNNNNNNNATATT 62595 |||| ||||||| |||| | |||| | || | ||| Sbjct 430514 TTTAATAAATCCCAATCCCAATATTTATTATCGACTTTTG--CATTCCACATATCAAATT 430457 Query 62596 GTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCC--TTCCTTCT 62652 ||| || || | || || | || | ||| ||||| ||||||||||| || ||| | Sbjct 430456 GTAATATTCCTTGGCTTGCTGGACTA-CCTTGATATGATTCATATGGTCCACTTACTTGT 430398 Query 62653 CAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGAT-CTTCTTA 62711 || | || | | | ||||| ||| | ||||| || |||||||| || ||||| | Sbjct 430397 --GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-A 430341 Query 62712 TTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62771 |||| |||| ||||| ||| ||||||| |||| || ||||| | || ||| Sbjct 430340 TTTAATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCT 430281 Query 62772 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62831 |||||||| || || || || |||||||||||||| ||||| || |||| |||||| | Sbjct 430280 AATCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTA 430221 Query 62832 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62891 | ||||||||||| | || |||||||||| | |||||| ||| | ||| | | Sbjct 430220 ACTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATA 430161 Query 62892 TCCTTCAGTTTGAGAAAATCAAA-----TCGCCCATCTAT-TACAAACATGTTCAATGCA 62945 || | | ||| ||||| ||| | ||||| ||||| || |||||| Sbjct 430160 TCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCA 430101 Query 62946 ACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 63005 | || || | |||||| || ||||| |||| || | ||||| || || ||| Sbjct 430100 ATGGAAGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAA 430041 Query 63006 CAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 63065 || | |||||| || || || ||||||||||||| |||||| || ||||| ||| Sbjct 430040 CATAAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCA 429981 Query 63066 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 63125 || ||||| | || |||| ||||||||| || || || || || || ||| Sbjct 429980 TCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCAT 429921 Query 63126 ACGACTCGAGCCTTTATTATAGATTTGTATC---TCCTTTCTCTTTCGTATAGAGTATAC 63182 | || | || | || | ||| | || ||||| ||||||| ||||| Sbjct 429920 AAATCTTGTGC---AAGAATTGTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGTATAT 429864 Query 63183 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATC 63242 ||| ||| || || || ||||| | || | |||||||||| || ||||| Sbjct 429863 AATTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCATTAGGGCACATT 429804 Query 63243 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63302 || | ||| | | ||||| |||| ||||||||| | |||||| | ||||| ||| Sbjct 429803 AAAGTCCAGTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCA 429744 Query 63303 ATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63362 ||||| ||| | | ||| ||| || || || ||| ||| | | ||| | || Sbjct 429743 TAAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAAT 429684 Query 63363 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63422 | | |||||| |||||||| ||||| | |||| || | | || | ||| | Sbjct 429683 TCAAAAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCT 429624 Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 || || ||||||| ||||| || || | |||| ||||||| ||||| || | | ||| Sbjct 429623 CCACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCA 429564 Query 63483 TTTGATATACCATTGGTACCGGAGATAT-AGCCTCCACTG-GCACGAATATTACTAATTG 63540 |||||||||||||| || || ||| | || | || || | ||||| | | Sbjct 429563 TTTGATATACCATTAGTTCCTCTGATGTAAGAAT--TTTGAGCTCTAATATCTTGTACAG 429506 Query 63541 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63600 | |||||| || ||||| ||||| || ||||| ||| | ||||| || ||| | | Sbjct 429505 CCACACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATA 429446 Query 63601 TGCCTTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63659 | |||||||| |||| ||| || ||| || ||| || |||||||||| | | Sbjct 429445 TACCTTCTATTGAATCAGATTTCATTGATAA-TAAAAAGCATGAAGACATTTGGGGTCTT 429387 Query 63660 GTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 63719 | ||||||| ||||||||| ||||||| ||| || ||||| |||||| || | || | Sbjct 429386 GGTGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAA 429327 Query 63720 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63779 | || || || | ||| || | ||| | ||| ||||||| | || | |||| Sbjct 429326 TGATAAGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATT 429267 Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 || | |||||||| | ||||| |||||| || || || || ||||| || |||| Sbjct 429266 AATAAATGCTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCT 429207 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63876 || |||||||| |||||||| | ||| ||| |||| Sbjct 429206 AATGTTTTAAATCCAAAATAATCGTAATTAAAATCTC 429170 >seq10 Length=1559237 Score = 172 bits (190), Expect = 7e-38 Identities = 366/541 (68%), Gaps = 4/541 (1%) Strand=Plus/Minus Query 33603 CCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 33662 || || ||||||||||| ||||| ||| ||| || | || | | | | ||| Sbjct 1415485 CCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGTAATTTATTTTGTTTT 1415426 Query 33663 TTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAG 33722 |||| ||||||||| | | || ||| ||| || |||||||| || ||| Sbjct 1415425 TTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTTCGACACATGCATTA 1415366 Query 33723 GCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCC 33782 || | || ||| || || || | | || | |||||| || ||||| || Sbjct 1415365 GCTACAATTCTTTCAGCAAAAGAGTTCGTATCGTTTATCCATTTAGCTGCCCATAATGCT 1415306 Query 33783 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA 33842 || ||||||| || || |||| || |||| ||| | || | | || || | Sbjct 1415305 TTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTCTCTTTCTCA 1415246 Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 || ||| |||| |||| || || | |||||| |||| || || || ||||||| || Sbjct 1415245 TCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGTATATTTTCAACAGCT 1415186 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 || ||||| | || || | | || || | || || |||||| | ||||| | || Sbjct 1415185 ATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCTCTTAAAAATT-TACT 1415127 Query 33963 -GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021 ||||||||||| |||||||||||||| ||||||||||| || | ||||||||||| Sbjct 1415126 AGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAGCACATGTTTTAT 1415067 Query 34022 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATATATCCA 34080 ||||| |||||| | | ||| ||| ||| || || || | ||| | |||| ||| | Sbjct 1415066 AAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAATCTA 1415008 Query 34081 CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGAT 34140 |||||| | ||||||||||| ||||| || |||||||| | |||||| | ||| ||| Sbjct 1415007 TTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAATTCCATACTTCAGGAT 1414948 Query 34141 A 34141 | Sbjct 1414947 A 1414947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814104512320