Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq6 607 8e-169 seq10 282 4e-71 >seq6 Length=837512 Score = 607 bits (672), Expect = 8e-169 Identities = 1160/1680 (69%), Gaps = 42/1680 (3%) Strand=Plus/Minus Query 36958 TCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGT 37017 || || ||||| || | |||| |||||| || |||||||| |||||||| | | | Sbjct 430850 TCAGCAGCCATGTCAATAATATTTTTTTGTTTGATTTCCCAAACGGTTTTATACAACTCT 430791 Query 37018 TTTATATTATCTGGTAAATC--TAA-ATGTTGAATAGAACCATTATGTAACAC-AATTGT 37073 || | | | |||| || ||| || ||||| | |||||||| | |||||| Sbjct 430790 TTCAAGTCACTAGGTATTTCGCTAATATATTGAACACTTCCATTATGGGCAATTAATTGT 430731 Query 37074 ATTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATT 37133 | || || || | || ||| | | |||| | || ||| | || | || ||||| Sbjct 430730 TGT-TTCATATCTTCATCCCAAAGACCTCTATCAAAAAGATCTTTTAACAAATGAGGATT 430672 Query 37134 TACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTC 37193 ||||| ||| || ||| ||| || | ||| ||| || || || ||||||||||| Sbjct 430671 AACAACAAAAAATTCACCACTTAAAACACGTCTGTAATAAATGTTACTTGTATATGGTTC 430612 Query 37194 AATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAG 37253 || ||| |||||||| | ||| ||||| || || || || || ||||| ||||||| || Sbjct 430611 AAAGGATTCATTATTTCCTAAAATTTGCGACGTTGAAGCTGTTGGCATAGGTGCTAAAAG 430552 Query 37254 AAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCA-TA 37312 ||| |||||| ||||||||| || | ||| | ||||||| | || ||||||||| || Sbjct 430551 AAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTTTTTAATAAATCCCAATCCCAATA 430492 Query 37313 AATCTGTTGGGTTCTTTAA--CCACATATCATATTGTAGAATACCTTTACTCGCTGGAGA 37370 | | | | | || | |||||||||| |||||| || |||| || |||||| Sbjct 430491 TTTATTATCGACTTTTGCATTCCACATATCAAATTGTAATATTCCTTGGCTTGCTGGACT 430432 Query 37371 ATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGA---TTCTAG 37427 | | | ||||| ||||| ||||| | || || | ||| ||| ||| ||||| Sbjct 430431 ACCTTGATATGATTCATATGGTCCACTTACTTGTGCCAATTC--AAC-AGACATTTCTAA 430375 Query 37428 TGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATC 37487 || |||||||| || ||||| || ||| | |||||||| ||| |||||||| || Sbjct 430374 AGCAGCATAATACATAGTTTCAAATATTCTTCTATTTAATTCTTTAGCTTCTTCAGATTC 430315 Query 37488 GAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGG 37547 ||| ||| | || | ||||| ||| || || || || || || || || || || Sbjct 430314 ATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCCTATTCCAATAGG 430255 Query 37548 TCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTAT 37607 ||||||| | ||||| ||||| || |||| | |||||||||||||| | || || || Sbjct 430254 TCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAACTGGATAATAATTTCTTTCAATAAT 430195 Query 37608 TTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACAT-AAATA 37666 ||||| || |||| || | ||||| ||||| || | | || | || || |||| Sbjct 430194 TTTATCTAAATTTCTAGTAATAATTTTAGTAAT-ATCATATAATTTTTTAAAATTAAATT 430136 Query 37667 CGTTATT------ATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAA 37720 | || || || ||||||||| | || | ||| || ||| |||||| ||||| | Sbjct 430135 CTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATGGAAGCTAAATTACAAACAGCTA 430076 Query 37721 CTTCATCTTCGTTAC-TAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTT 37779 ||||||| || | || ||| ||||| || ||| | |||||| || |||||||| Sbjct 430075 CTTCATCAG-GTGATGTATATTCAATAATTTCACAACATAAATTACTGCATTTAATTGTT 430017 Query 37780 CCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTT 37839 || ||||| ||||||| ||||| |||||| | ||||||||||| ||||| || Sbjct 430016 CCTAAATTTTTTTGATTCGATTTAGAATTACATGCATCTTTATATAACATATATGGTACA 429957 Query 37840 CCTTGTTCTATTTGAGCCTCGATA-ATAGATTTCCATAAACTTCTTGCTTTAACGATCGC 37898 || ||||||||| || | | | |||| ||||||| ||||| | || || | Sbjct 429956 CCAGTTTCTATTTG-GCTTTGTAATATAGCAAACCATAAA--TCTTG-TGCAAGAATTGT 429901 Query 37899 TTTAAttt-----ttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCC 37953 ||| || ||||||| |||||||| | |||||||||| | ||| || | ||| Sbjct 429900 TTTTTTTCCAAGATTTTCTTC--TTCGTATTTTGTATATAATTTTTCAAATTCTTCACCC 429843 Query 37954 CATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCA-TTCTTCATCTTT 38012 || || | ||| ||||||||||| || ||||||| || ||| ||||| || || Sbjct 429842 CAGGTTTCACTTAAGCCTGGACATTCATTAGGGCACATTAAAGTCCAGTTCTT-ATTTTC 429784 Query 38013 TTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCT 38072 | ||| | || ||||||||||||||||||||| | ||| ||||||||| | ||| Sbjct 429783 CTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCACGAGCTCT 429724 Query 38073 ATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCA 38132 ||||||| || || ||| |||||||| || ||| || || ||||| | ||||| Sbjct 429723 CAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAATGCCA 429664 Query 38133 TGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCT 38192 |||||| | ||| | | | | ||| |||||| | || || |||| | |||||| Sbjct 429663 TGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCTACATATCT 429604 Query 38193 AACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACC 38252 |||| | |||| | | ||||||||| || |||| |||||| ||| | || || | || Sbjct 429603 TGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCATTTGATATACCATTAGTTCC 429544 Query 38253 GGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATG 38312 || |||| | | ||||| |||| || | || ||||| || ||||| || Sbjct 429543 TCTGATGTAAGAATTTTGAGCTCTAATATCTTGTACAGCCACACCTATACCTCCTGC-TG 429485 Query 38313 TTTTGATATTAAA-GCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCT 38371 |||| || | || || ||||| ||||| || ||||||||||||||||| ||| | Sbjct 429484 TTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTGAATCAGATT 429425 Query 38372 TTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATG 38431 | |||| || || ||| || ||||||||| || ||| ||||| | |||||||||| Sbjct 429424 TCATTGATAATAAAAAGCATGAAGACATTTGGGGTCTTGGTGTTCCCGAATTAAATAATG 429365 Query 38432 TAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCAT 38491 |||||| ||||| | || |||||| |||| ||| ||| ||||||| | | | Sbjct 429364 TAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAATGATAAGTTTCTAAAGCCTTTT 429305 Query 38492 CTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551 | | |||| | || || |||| |||||| ||||||| | ||| || || | ||| | Sbjct 429304 CAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATAAATGCTGAGGACGTTCAA 429245 Query 38552 TTATTTTATTATT-CTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAA 38610 | ||||||||||| | ||| || || || ||||||||||||| | |||||||||| Sbjct 429244 TAATTTTATTATTAATACGTAA-TAAGTAAGACCTTTCTAATGTTTTAAATCCAAAATAA 429186 >seq10 Length=1559237 Score = 282 bits (312), Expect = 4e-71 Identities = 591/867 (68%), Gaps = 14/867 (2%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 |||||||| || ||||| ||| || ||||| || || |||| || ||||| | Sbjct 1415797 TTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAG 1415738 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| | ||||| ||||| | | || ||| ||||| |||||||| | |||| Sbjct 1415737 TCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAAT 1415678 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||| ||| || || ||||| || || |||||||| | | ||||||| || || | | Sbjct 1415677 AATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCATTCCAATTAAA 1415618 Query 11519 TCCACCGGAATAGCAACTGTCAAA-AACTCCT-TTTCTATATTAACCGCATCAATGATTA 11576 || || | || | | |||| || | | |||||| | ||| || || | | || Sbjct 1415617 TCACAAGGTAAAG--ATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTA 1415560 Query 11577 TCGACGTT--ATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGC 11634 | | || | ||| || | | | || | ||| || | |||||||| Sbjct 1415559 T--ATTTTGAACAACCTCTTCTGGCAATTTATTTTCTAACAAGCTATAAATTAAACAATT 1415502 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 |||||| ||||| ||||| |||||||| || | ||||||| ||||||||| || | Sbjct 1415501 AAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATG 1415442 Query 11695 CA-TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTC 11753 | | || | ||||||| | ||||||||| ||| ||| ||| ||| ||||||| Sbjct 1415441 TAATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTC 1415383 Query 11754 CCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATT 11813 | || ||| |||| ||||| | |||||| || | || | |||||||| Sbjct 1415382 CTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCGTTTATCCATT 1415323 Query 11814 TTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAAT 11873 | ||||| ||||| ||||||| | || |||| ||||| | |||||||| Sbjct 1415322 TAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAAT 1415263 Query 11874 GCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAAT 11933 | | | ||| | | ||| || | ||| |||| |||||||||||||| |||| || | Sbjct 1415262 TTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGT 1415203 Query 11934 GAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACT-GTACA 11992 | |||||||| | |||||||||||| |||| |||| | || || | | | |||| Sbjct 1415202 GTATATTTTCAACAGCTATTTGAAAAGCATA-AAACTTTTTGGCTTCAATTATTTGTACT 1415144 Query 11993 TCCACATAAAATCTTTCC-GCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAA 12051 || | ||||| || | |||||||| || ||| || |||||||||| ||||||||| Sbjct 1415143 TCT-CTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAA 1415085 Query 12052 TGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAA 12111 |||||| | |||||||||||| | |||||| | | | ||||||| || | || | || Sbjct 1415084 TGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCAAAGTCTTTCAA 1415025 Query 12112 ATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACAT 12171 ||| |||||||||||| ||||||| | |||||||| ||| | | || |||||| | Sbjct 1415024 ATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAA 1414965 Query 12172 TTTCCAGATATCATGATACTTAATAGG 12198 ||||| | ||| ||||| ||||||| Sbjct 1414964 ATTCCATACTTCAGGATACATAATAGG 1414938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468522199687360