Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6 385 6e-102 seq10 187 3e-42 >seq6 Length=837512 Score = 385 bits (426), Expect = 6e-102 Identities = 1008/1526 (66%), Gaps = 39/1526 (3%) Strand=Plus/Minus Query 65168 ATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 65227 ||| |||||||| || |||||| ||| || || | | ||||| ||||| || Sbjct 430680 ATGAGGATTAACAACAAAAAATTCACCACTTAAAACACGTCTGTAATAAATGTTACTTGT 430621 Query 65228 ATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 65287 ||| ||||| | || ||||||||||| |||||||| | ||||| || || |||||||| Sbjct 430620 ATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGCGACGTTGAAGCTGTTGGCATAGG 430561 Query 65288 TGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCA 65347 ||| | | | | |||||| | || | | | || ||||| | ||||| ||||| Sbjct 430560 TGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTTTTTAATAAATCCCA 430501 Query 65348 ATTCCAAAGATC-----CGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTA 65402 || |||| | |||| | | ||||| || || | Sbjct 430500 ATCCCAATATTTATTATCGACTTTTG--CATTCCACATATCAAATTGTAATATTCCTTGG 430443 Query 65403 CTGGC-GTACGATCCTACATATGTATCGTATGGTCC--TTCCTTCTCAGCTAGTTCACAA 65459 || || | || | ||| ||||| || |||||||| || ||| | || | |||| | Sbjct 430442 CTTGCTGGACTA-CCTTGATATGATTCATATGGTCCACTTACTTGT--GCCAATTCAACA 430386 Query 65460 CTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATTTAGATCTTGTGC 65518 | ||||| ||| | ||||| || ||||| || || ||||| ||||| |||| || Sbjct 430385 GACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATTTAATTCTTTAGC 430327 Query 65519 TTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 65576 ||| ||| | || ||||||| |||| || ||||| | |||||||||||||| || Sbjct 430326 TTCTTCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACT 430269 Query 65577 CCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAA 65636 || || || |||||||||||||| ||||| || |||| |||||| || ||||||||| Sbjct 430268 CCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAACTGGATAATAA 430209 Query 65637 TTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTG 65696 || | || |||||||||| | |||||| ||| | ||| | ||| | | ||| Sbjct 430208 TTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATATAATTTT 430149 Query 65697 AGAAAATCAAA-----TCGCTCATCTAT-TACAAACATGTTCAATGCAACAGATGCCAGA 65750 ||||| ||| | | ||||| ||||| || ||||||| || || | | Sbjct 430148 TTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATGGAAGCTAAA 430089 Query 65751 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 65810 |||||||| ||||| |||| || | ||||| || || ||| || | |||||| Sbjct 430088 TTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAAATTACTG 430029 Query 65811 CACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 65870 || || || ||||||||||||| |||||| || ||||| ||||| ||||| | Sbjct 430028 CATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCATCTTTATATAAC 429969 Query 65871 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC 65930 || |||| ||||||||| || || || || || || ||| | || | || Sbjct 429968 ATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAATCTTGTGC- 429910 Query 65931 TTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAAC 65987 | || | ||| | || |||||| ||||||| |||||| ||| ||| || Sbjct 429909 --AAGAATTGTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGTATATAATTTTTCAAAT 429852 Query 65988 TCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCT 66047 || || ||||| | || || |||||||||| || ||||| || | ||| | Sbjct 429851 TCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCATTAGGGCACATTAAAGTCCAGTTC 429792 Query 66048 CCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCT 66107 | ||||| |||| ||||||||| | |||||| | ||||| ||| ||||||||| Sbjct 429791 TTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCA 429732 Query 66108 CTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCA 66167 | | ||| ||| || || || ||| ||| | | ||| | || | | |||||| Sbjct 429731 CGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCT 429672 Query 66168 TAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCT 66227 ||||||| ||||| | |||| || | | || | ||| ||| || |||||| Sbjct 429671 GAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCT 429612 Query 66228 ATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCA 66287 | ||||| || || | |||| ||||||| ||||| || | | |||||| ||| ||||| Sbjct 429611 ACATATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCATTTGATATACCA 429552 Query 66288 TTGGTCCCGGAGAT---ATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATT 66344 || || || ||| | | || | || | ||||| | | | |||||| Sbjct 429551 TTAGTTCCTCTGATGTAAGAATTTTGA---GCTCTAATATCTTGTACAGCCACACCTATA 429495 Query 66345 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATA 66404 || ||||| ||||| || ||||| ||| | ||||| || ||| | || || ||||| Sbjct 429494 CCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATT 429435 Query 66405 CTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGC 66463 |||| ||| || ||| || ||| || |||||||||| | | ||||||| Sbjct 429434 GAATCAGATTTCATTGATAA-TAAAAAGCATGAAGACATTTGGGGTCTTGGTGTTCCCGA 429376 Query 66464 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTC 66523 ||||||||| ||||||| ||| || ||||| |||||| || | || || || || || Sbjct 429375 ATTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAATGATAAGTTTC 429316 Query 66524 AATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 66583 | ||| || | ||| | ||| ||||||| | || | |||||| | ||||| Sbjct 429315 TAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATAAATGCTG 429256 Query 66584 AGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAA 66643 ||| | ||||| || || || || || || ||||| || |||| || |||||||| Sbjct 429255 AGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAATGTTTTAAA 429196 Query 66644 ACCAAAATAGTTGTATGAAAAGTCTC 66669 |||||||| | ||| ||| |||| Sbjct 429195 TCCAAAATAATCGTAATTAAAATCTC 429170 >seq10 Length=1559237 Score = 187 bits (206), Expect = 3e-42 Identities = 378/556 (68%), Gaps = 4/556 (1%) Strand=Plus/Minus Query 36164 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 36223 ||||| ||||| || || ||||||||||| ||||| || ||| || | || | Sbjct 1415500 AAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGT 1415441 Query 36224 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 36283 | | | ||||||| ||||||||| | ||| |||| ||| || |||||| Sbjct 1415440 AATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCT 1415381 Query 36284 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTT 36343 || || ||| || | || ||| || || || | | || | |||||| || Sbjct 1415380 TCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCGTTTATCCATTTA 1415321 Query 36344 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 36403 ||||| || || ||||||| || || | || ||||||| ||| | || Sbjct 1415320 GCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTT 1415261 Query 36404 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 36463 | | || || ||| ||| ||| ||||||| || | |||||| |||| || || Sbjct 1415260 AATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGT 1415201 Query 36464 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || ||||||| || |||||||| | || || | | || || | || ||||||||| Sbjct 1415200 ATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCT 1415141 Query 36524 GTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 36582 | ||||| | || ||||||||||| |||||||| ||||| ||||||||||| || Sbjct 1415140 CTTAAAAATT-TACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGC 1415082 Query 36583 CAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAA-TCATTGATAT 36641 | |||||||||||||||| |||||| ||| ||| ||| ||| || || || | || Sbjct 1415081 TAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAAT 1415023 Query 36642 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 36701 | | |||| ||| | |||||| | ||||||||||| ||||| || |||||||| | || Sbjct 1415022 CACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAAT 1414963 Query 36702 TCCAGATGTCATGATA 36717 |||| | ||| |||| Sbjct 1414962 TCCATACTTCAGGATA 1414947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658169147140960