Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq6 114 1e-20 seq11 95.1 1e-14 >seq6 Length=837512 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | |||||||| || | ||||| ||||||||||||||||| || Sbjct 386948 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGAT 386889 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || |||||| | ||||| ||||| | || | | ||| ||||| || || Sbjct 386888 AATGTTCTACCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGG 386829 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| |||| | |||| | || || | || || | || || || Sbjct 386828 ATACCTTCTTTATCT-TGAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAAC 386770 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||| || | || || ||||| || ||||||||||| ||||||||| || Sbjct 386769 ATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCATACCT 386718 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | ||||||||||| | || || |||||||||||||| || || Sbjct 386720 CCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGAT 386661 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| | ||||| || ||| | || | | ||| ||||| ||||| Sbjct 386660 AGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGA 386601 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCAC 139716 || |||||||| || ||| |||| | |||| | || || || | || | ||||| || Sbjct 386600 ATACCTTCTTTATCT-TGAATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAAC 386542 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||| || | || || ||||| || ||||||||||| || |||||| || Sbjct 386541 ATCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCATACCT 386490 Score = 105 bits (116), Expect = 7e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | ||||||||||| | ||||| |||||||||||||| ||||| Sbjct 386492 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCAGAT 386433 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || || || | ||||| ||||| | || | | ||| ||||| || || Sbjct 386432 AGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGA 386373 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| |||| | |||| | | ||| | || || | || || || Sbjct 386372 ATACCTTCTTTATC-TTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGTTCAAC 386314 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||| || | || || ||||| || |||||||| || ||||||||| || Sbjct 386313 ATCAAGAGTAATTGTTTTTCCGGTTAAAGTTTTTACAAAGATTTGCATACCT 386262 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | |||||||| || | ||||| ||||||||||||||||| || Sbjct 386264 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGAT 386205 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || |||||| | || || |||||| | || | | ||| ||||| || || Sbjct 386204 AATGTTCTACCGTCTTCTAATTGCTTTCCAGCAAAAATTAATCTTTGTTGATCAGGTGGG 386145 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| |||| | |||| | | ||| | || |||| ||||| || Sbjct 386144 ATACCTTCTTTATC-TTGAATTTTAGCTTTAACATTTTCAATGGTATCGGATGGCTCAAC 386086 Query 139717 CTCAACGGT 139725 |||| ||| Sbjct 386085 ATCAAGGGT 386077 >seq11 Length=1651515 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||||||||||||||| || | ||| || ||||| | ||||| ||| Sbjct 1490891 GTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 1490950 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || | || | | ||| ||||| || || || |||||||| || ||||||| ||| Sbjct 1490951 GCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTA 1491010 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||| || | || || || |||| || | || || ||||| || ||| Sbjct 1491011 ACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1491070 Query 139748 TTTACGAATATTTGCAT 139764 ||||| || |||||||| Sbjct 1491071 TTTACAAAGATTTGCAT 1491087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496061246844800