Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6 470 2e-127 seq10 181 2e-40 >seq6 Length=837512 Score = 470 bits (520), Expect = 2e-127 Identities = 1029/1522 (68%), Gaps = 31/1522 (2%) Strand=Plus/Minus Query 79047 ATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 79106 ||| |||||||| || |||||| ||| || || | | ||||| ||||| || Sbjct 430680 ATGAGGATTAACAACAAAAAATTCACCACTTAAAACACGTCTGTAATAAATGTTACTTGT 430621 Query 79107 ATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGG 79166 ||||||||| | |||||||||||||| |||||||| | ||||| || ||||||||||| Sbjct 430620 ATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGCGACGTTGAAGCTGTTGGCATAGG 430561 Query 79167 TGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCA 79226 ||| | | | | |||||| | || | | || ||||| | ||||| | ||||| Sbjct 430560 TGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTTTTTAATAAATCCCA 430501 Query 79227 ATCCCAAAGATCAGACGGGACAA---CATTCCAAAGATCATATTGTAGAATACCGTTACT 79283 ||||||| | | ||| ||||||| | |||| |||||| || || | || Sbjct 430500 ATCCCAATATTTATTATCGACTTTTGCATTCCACATATCAAATTGTAATATTCCTTGGCT 430441 Query 79284 AGC-GTATGATCCTGTGTATGTTTCATAAGGTCC--TTCCTTTTCGGCTAATTCACAACT 79340 || | | | | || |||| |||||| ||||| || ||| | || |||||| | Sbjct 430440 TGCTGGACTACCTTGA-TATGATTCATATGGTCCACTTACTTGT--GCCAATTCAACAGA 430384 Query 79341 CGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAAT-CTTCTTATTGAGATCTTGTGCTT 79399 | ||||| || | ||||| || ||||| || || ||||| ||| | |||| |||| Sbjct 430383 CATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATTTAATTCTTTAGCTT 430325 Query 79400 CTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAA 79459 || ||| ||||||| |||| || ||||| | |||||||||||||| || || | Sbjct 430324 CTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCCTA 430265 Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519 | || |||||||||||||| ||||| || |||| |||||| || ||||||||||| Sbjct 430264 TTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAACTGGATAATAATTTC 430205 Query 79520 TATCTATAATTTTATTGAGATTCCTGACTATTACTTTGA-CCACATCCTTTAGTTTGAGA 79578 | || |||||||||| | ||| || | || || ||| | | ||| | || ||| | Sbjct 430204 TTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAATATCATATAATTTTTTA 430146 Query 79579 AAATCAAA-----TCGTCCATCTAT-TACAAACATGTTCAACGCGACAGATGCCAGATTA 79632 |||| ||| | | ||||| ||||| || || || | || || | |||| Sbjct 430145 AAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATGGAAGCTAAATTA 430086 Query 79633 CAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACAC 79692 ||||| ||||| |||| || | ||||| || |||||| || | ||||| || Sbjct 430085 CAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAAATTACTGCAT 430026 Query 79693 TTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 79752 ||||| ||||||||||||| |||||| || ||||| ||||| ||||| | || Sbjct 430025 TTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCATCTTTATATAACATA 429966 Query 79753 AACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 79812 | || ||||||||| || || || || || || ||| | || | || Sbjct 429965 TATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAATCTTGTGC---A 429909 Query 79813 ATTATAGACTTGTATC---TCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCG 79869 | || | || | || |||||| |||||||| |||||||||| ||| || || Sbjct 429908 AGAATTGTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGTATATAATTTTTCAAATTCT 429849 Query 79870 TCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCA 79929 || ||||| || ||| || |||||||| | ||| ||||| || | ||| | | Sbjct 429848 TCACCCCAGGTTTCACTTAAGCCTGGACATTCATTAGGGCACATTAAAGTCCAGTTCTTA 429789 Query 79930 TCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 79989 | |||||||||| ||||||||| | |||||| | ||||| ||| ||||| ||| | Sbjct 429788 TTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCACGA 429729 Query 79990 GTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 80049 | ||| || || || || ||| ||| | | ||| | || | | |||||| ||| Sbjct 429728 GCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAA 429669 Query 80050 TGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATG 80109 ||||| ||||| | |||| || | | || || ||| ||| || ||||||| Sbjct 429668 TGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCTACA 429609 Query 80110 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTG 80169 ||||| || || | |||| ||||||| ||||| || | | |||||| ||| ||||||| Sbjct 429608 TATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCATTTGATATACCATTA 429549 Query 80170 GTCCCGGAGATAT-AGCTTCCACTG-GCACGAATATTACTAATTGATAGACCTATTCCCC 80227 || || ||| | || | || || | ||||| | | | |||||| || | Sbjct 429548 GTTCCTCTGATGTAAGAAT--TTTGAGCTCTAATATCTTGTACAGCCACACCTATACCTC 429491 Query 80228 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTAT 80287 |||| ||||| || ||||| ||| | ||||| || ||| | || || ||||| || Sbjct 429490 CTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTGAAT 429431 Query 80288 CATCAATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTA 80346 || ||| || ||| || ||| || |||||||||| | | ||||||| |||| Sbjct 429430 CAGATTTCATTGATAA-TAAAAAGCATGAAGACATTTGGGGTCTTGGTGTTCCCGAATTA 429372 Query 80347 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATA 80406 ||||| ||||||| ||| || ||||| |||||| |||| || || || || || | | Sbjct 429371 AATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAATGATAAGTTTCTAAA 429312 Query 80407 GCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGT 80466 || ||| | ||| | ||| ||||||| | || | |||||| | |||||||| Sbjct 429311 GCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATAAATGCTGAGGA 429252 Query 80467 CTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCA 80526 | ||||| || || ||||| || || |||||||| |||| || |||||||| ||| Sbjct 429251 CGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAATGTTTTAAATCCA 429192 Query 80527 AAATAGTTGTATGAAAAGTCTC 80548 ||||| | ||| ||| |||| Sbjct 429191 AAATAATCGTAATTAAAATCTC 429170 >seq10 Length=1559237 Score = 181 bits (200), Expect = 2e-40 Identities = 335/485 (69%), Gaps = 6/485 (1%) Strand=Plus/Minus Query 50038 TTTTTAAGCCAAAATATGGACGCAAATGAC--CCAGAAAAGAAGATTCCTTCTACTGCGG 50095 ||||||| ||||||||| | | |||| || ||| ||| || |||||||| || | Sbjct 1415428 TTTTTAAACCAAAATATTG-CACAAAA-ACTTCCACTAAATAATATTCCTTCGACACATG 1415371 Query 50096 CAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTTTTGAGCCCAAT 50155 || || |||| ||| || || || | | || | |||||| || ||||| Sbjct 1415370 CATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCGTTTATCCATTTAGCTGCCCATA 1415311 Query 50156 CGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCAT 50215 || || ||||||| || || |||| || |||| ||| | || | | || | Sbjct 1415310 ATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTCTCTT 1415251 Query 50216 TACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 50275 | ||| ||| |||| |||| || || | |||||| |||| || || || ||||||| Sbjct 1415250 TCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGTATATTTTCAA 1415191 Query 50276 TGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATC 50335 || || ||||| | || || | | || || | || || |||||| | ||||| Sbjct 1415190 CAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCTCTTAAAAATT 1415131 Query 50336 GTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTT 50395 |||||||||||| |||||||| ||||| ||||||||||| || | ||||||| Sbjct 1415130 TACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAGCACATGTT 1415071 Query 50396 TTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATATA 50454 |||||||||||||||| || ||| ||| ||| || || || | ||| | |||| | Sbjct 1415070 TTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAA 1415012 Query 50455 TCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCA 50514 |||| |||||| | ||||||||||| ||||| || |||||||| | |||||| | ||| Sbjct 1415011 TCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAATTCCATACTTCA 1414952 Query 50515 TGATA 50519 |||| Sbjct 1414951 GGATA 1414947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264813608160