Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq10 259 5e-64 >seq10 Length=1559237 Score = 259 bits (286), Expect = 5e-64 Identities = 629/934 (67%), Gaps = 29/934 (3%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 ||||||||| | ||| ||||| || | || | | | | || ||||| || |||| Sbjct 1415854 TAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTT 1415795 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| || |||||| ||||||||||| || ||||| |||| | ||||| ||| Sbjct 1415794 TGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAGTCC 1415735 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAG---TTCTAATAGT 13700 || || |||||||||| |||| || ||||| ||||||| |||||||| Sbjct 1415734 ATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAATA-- 1415677 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAG 13759 ||| |||||||| ||| ||||| ||||||||||| || || ||||||| || |||| Sbjct 1415676 -ATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAATTCATTCCAATTAA 1415619 Query 13760 TTTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 | ||| | | ||| || |||| | |||||| || || ||||| | | Sbjct 1415618 ATCACAAGGTAA-AGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTA 1415560 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGGATATTTT---AGATGTTTAAAAATTAAACACG 13875 || || || || ||| | | | | |||||| | | | | | |||||||||| Sbjct 1415559 TATTTTGAACAACCTCTTCTG--GCAATTTATTTTCTAACAAGCT-ATAAATTAAACAAT 1415503 Query 13876 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-T 13934 |||||| || | || |||||||||||||| | ||| || ||||||||| || | Sbjct 1415502 TAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCAT 1415443 Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATT 13994 | || || | ||||||| ||||||||||||||| ||| || ||| |||||| Sbjct 1415442 GTAATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATT 1415384 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14054 || || || ||| |||| | || ||| |||| || | | ||| |||| Sbjct 1415383 CCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCGTT---TATC 1415327 Query 14055 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14114 ||||| |||||| | ||| ||||| || || |||||||||||| |||| Sbjct 1415326 CATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAAT 1415267 Query 14115 AAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14174 |||| | ||||||| | ||| || ||||||| | ||| ||||| ||||| Sbjct 1415266 AAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCA 1415207 Query 14175 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGT 14234 |||||||| ||||| | |||||| |||||| ||||||| | | ||||| |||| Sbjct 1415206 GAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGT 1415147 Query 14235 ACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14294 ||||| ||||| | || |||||||| ||||| |||||||||||||||||| Sbjct 1415146 ACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAA 1415087 Query 14295 AATGCCA--ATATGTTTTTAATAAAGTATTGCTC-TTCATTGTTGAGTTTTTTCCAA-TC 14350 ||||| | | ||||||| ||||| | || || || | || | |||||| || || Sbjct 1415086 AATGCTAGCACATGTTTT--ATAAAATGTTTTTCATTTACATTTAA--TTTTTCAAAGTC 1415031 Query 14351 GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14410 ||||| | || | ||||| ||| ||| | |||||||| || |||||||||| Sbjct 1415030 TTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTT 1414971 Query 14411 ATACATTACCCATATTTCTTTATATAATATAGGA 14444 ||| | ||||| ||| ||| | |||||| Sbjct 1414970 ATAAAAATTCCATACTTCAGGATACATAATAGGA 1414937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479725337509600