Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq10 221 1e-52 >seq10 Length=1559237 Score = 221 bits (244), Expect = 1e-52 Identities = 620/932 (67%), Gaps = 25/932 (3%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 ||||||||| | ||| ||||| || | || | | | | || ||||| || |||| Sbjct 1415854 TAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTT 1415795 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| || |||||| |||||||| || || ||||| |||| | ||||| ||| Sbjct 1415794 TGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAGTCC 1415735 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491 || || ||||||||| |||| || ||||| ||||||| | ||||||| Sbjct 1415734 ATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAATAAT 1415675 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAGTTT 13550 | |||||||| ||| ||||| ||||||||||| || || ||||||| || |||| | Sbjct 1415674 CGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAATTCATTCCAATTAAATC 1415616 Query 13551 TACAGGAATTATATTAGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 ||| | | ||| || |||| | |||||| || || || || | ||| Sbjct 1415615 ACAAGGTAA-AGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTATAT 1415557 Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTT---AGATGTTTAAAAATTAAACACGCAA 13666 | | || || || | | | | |||||| | | | | | |||||||||| || Sbjct 1415556 TTTGAACAACCTCTTCTG--GCAATTTATTTTCTAACAAGCT-ATAAATTAAACAATTAA 1415500 Query 13667 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGC 13725 |||| || | || |||||||||||||| | ||| || ||||||||| || || Sbjct 1415499 AATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGTA 1415440 Query 13726 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 13785 || || | ||||||| ||||||||||||||| || ||| ||| |||||||| Sbjct 1415439 ATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCT 1415381 Query 13786 TCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCAT 13845 || || ||| |||| | || ||| |||| || | | |||| |||||| Sbjct 1415380 TCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCGTTT---ATCCAT 1415324 Query 13846 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAA 13905 || |||||| | ||| ||||| || || |||| || |||| |||||| Sbjct 1415323 TTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAA 1415264 Query 13906 TGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 13965 | | ||||||| | ||| || ||||||| | ||| ||||| |||||||| Sbjct 1415263 TTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAG 1415204 Query 13966 TGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACC 14025 ||||| ||||| | |||||| |||||| ||||||| | | ||||| ||||| | Sbjct 1415203 TGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTA-C 1415145 Query 14026 TCCGAGTAAAATCTTTCT-GCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084 | | ||||| || || || || ||||| || || |||||||||||||||||||| Sbjct 1415144 TTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAA 1415085 Query 14085 TGCCA--ATATGTTTTTAATAAAGTATTGCTC-TTCATTGTTGAGTTTTTTCCAA-TCGG 14140 ||| | | ||||||| ||||| | || || || | || | |||||| || || Sbjct 1415084 TGCTAGCACATGTTTT--ATAAAATGTTTTTCATTTACATTTAA--TTTTTCAAAGTCTT 1415029 Query 14141 CTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTAT 14200 ||||| | || | ||||| ||| ||| | |||||||| || |||||||||||| Sbjct 1415028 TCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTAT 1414969 Query 14201 ACATTACCCATATTTCTTTATATAATATAGGA 14232 | | ||||| ||| ||| | |||||| Sbjct 1414968 AAAAATTCCATACTTCAGGATACATAATAGGA 1414937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478586143832160