Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6 414 1e-110 seq10 174 2e-38 >seq6 Length=837512 Score = 414 bits (458), Expect = 1e-110 Identities = 1011/1520 (67%), Gaps = 27/1520 (2%) Strand=Plus/Minus Query 71130 ATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAA---ATATTACT 71186 |||||||||||| || |||||| ||| || || ||| ||||| || ||||| Sbjct 430680 ATGAGGATTAACAACAAAAAATTCACCACTTAAAAC---ACGTCTGTAATAAATGTTACT 430624 Query 71187 GGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCAT 71246 ||||| ||||| | || ||||||||||| |||||||| | ||||| || || ||||| Sbjct 430623 TGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGCGACGTTGAAGCTGTTGGCAT 430564 Query 71247 AGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTC 71306 |||||| | | ||| |||||| | |||||| | ||||| | ||||| | || Sbjct 430563 AGGTGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTTTTTAATAAATC 430504 Query 71307 CCAATTCCAA-AGATCCGATGG--TACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTT 71363 ||||| |||| | | || | | | || || | Sbjct 430503 CCAATCCCAATATTTATTATCGACTTTTGCATTCCACATATCAAATTGTAATATTCCTTG 430444 Query 71364 ACTAGC-GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAAC 71422 || || | | | | || ||||| || |||||||| | || || | |||| | Sbjct 430443 GCTTGCTGGACTACCTTG-ATATGATTCATATGGTCCACTTACTTGTGCCAATTCAACAG 430385 Query 71423 TCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAAT-CTTCTTATTGAGATCTTGTGCT 71481 | ||||| || ||||||| || ||||| || || ||||| ||| | |||| ||| Sbjct 430384 ACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATTTAATTCTTTAGCT 430326 Query 71482 TCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCA 71541 || ||| ||||||| |||| || ||||| | |||||||||||||| || || Sbjct 430325 TCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCCT 430266 Query 71542 ATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTA 71601 || || |||||||| ||||| ||||| || |||| |||||| || ||||||||||| Sbjct 430265 ATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAACTGGATAATAATTT 430206 Query 71602 ATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGA-CCACATCCTTTAGTTTGAG 71660 | || |||||||||| | |||||| | || || ||| | | ||| | || ||| Sbjct 430205 CTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAATATCATATAATTTTTT 430147 Query 71661 AAAATCAAA-----TCTCCCATCTAT-TACAAACACGTTCAAGGCAACAGATGCCAGATT 71714 ||||| ||| | | ||||| ||||| | || |||| || || | ||| Sbjct 430146 AAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATGGAAGCTAAATT 430087 Query 71715 ACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACA 71774 |||||| ||||| |||| || | ||||| ||||||||| || | |||||| || Sbjct 430086 ACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAAATTACTGCA 430027 Query 71775 CTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 71834 || || ||||||||||||| |||||| || ||||| ||||| ||||| | || Sbjct 430026 TTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCATCTTTATATAACAT 429967 Query 71835 AAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTT 71894 | | || ||||||||| || || || || || || ||| | || | || Sbjct 429966 ATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAATCTTGTGCAAG 429907 Query 71895 TATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTC 71954 ||| | || || |||||| |||||||| |||||||||| ||| || || || Sbjct 429906 AATTGTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGTATATAATTTTTCAAATTCTTC 429847 Query 71955 TCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATC 72014 ||||| | | ||| || ||||||||||| || ||||| || | ||| | || Sbjct 429846 ACCCCAGGTTTCACTTAAGCCTGGACATTCATTAGGGCACATTAAAGTCCAGTTCTTATT 429787 Query 72015 ATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 72074 || ||||||| ||||||||| | |||||| | ||||| ||| ||||| ||| | | Sbjct 429786 TTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCACGAGC 429727 Query 72075 TCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 72134 ||| || || || || ||| ||| | | ||| | || | | |||||| ||||| Sbjct 429726 TCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAATG 429667 Query 72135 CCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTA 72194 ||| ||||| | |||| || | | || | ||| ||| || ||||||| || Sbjct 429666 CCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCTACATA 429607 Query 72195 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT 72254 ||| || || | |||| ||||||| ||||| || | | |||||| ||| |||||| || Sbjct 429606 TCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCATTTGATATACCATTAGT 429547 Query 72255 CCCGGAGATAT-AGCTTCCACTG-GCACGAATATTGCTAATTGATAGACCTATTCCCCCT 72312 || ||| | || | || || | ||||| | | | |||||| || ||| Sbjct 429546 TCCTCTGATGTAAGAAT--TTTGAGCTCTAATATCTTGTACAGCCACACCTATACCTCCT 429489 Query 72313 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 72372 || ||||| || ||||| ||| | ||||| || ||| | || || ||||| |||| Sbjct 429488 GCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTGAATCA 429429 Query 72373 TCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 72431 ||| || ||| || ||| || |||||||||| | | ||||||| |||||| Sbjct 429428 GATTTCATTGATAA-TAAAAAGCATGAAGACATTTGGGGTCTTGGTGTTCCCGAATTAAA 429370 Query 72432 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGC 72491 ||| ||||||| ||| || ||||| |||||| |||| || || || || || | ||| Sbjct 429369 TAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAATGATAAGTTTCTAAAGC 429310 Query 72492 TGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCT 72551 ||| | ||| | ||||||||||| | || | |||||| | ||||||||| | Sbjct 429309 CTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATAAATGCTGAGGACG 429250 Query 72552 TTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 72611 ||||| || || ||||| || || ||||| || |||| || |||||||| ||||| Sbjct 429249 TTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAATGTTTTAAATCCAAA 429190 Query 72612 ATAGTTGTATGAAAAGTCTC 72631 ||| | ||| ||| |||| Sbjct 429189 ATAATCGTAATTAAAATCTC 429170 >seq10 Length=1559237 Score = 174 bits (192), Expect = 2e-38 Identities = 364/540 (67%), Gaps = 2/540 (0%) Strand=Plus/Minus Query 42086 CCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 42145 || |||||||||||||| ||||| || ||| || | || | | | | ||| Sbjct 1415485 CCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGTAATTTATTTTGTTTT 1415426 Query 42146 TTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAG 42205 |||| ||||||||| | ||| |||| ||| || |||||||| || ||| Sbjct 1415425 TTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTTCGACACATGCATTA 1415366 Query 42206 GCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCC 42265 || | || ||| || || || | | || | |||||| || ||||| || Sbjct 1415365 GCTACAATTCTTTCAGCAAAAGAGTTCGTATCGTTTATCCATTTAGCTGCCCATAATGCT 1415306 Query 42266 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA 42325 || ||||||| || || |||| || |||| ||| | || | | || || | Sbjct 1415305 TTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTCTCTTTCTCA 1415246 Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 || ||| ||| |||| || || | |||||| |||| || || || ||||||| || Sbjct 1415245 TCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGTATATTTTCAACAGCT 1415186 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA 42445 || ||||| | || || | |||| || | | ||||||||| | ||||| | Sbjct 1415185 ATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCTCTTAAAAATTTACTA 1415126 Query 42446 GCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 42505 ||||||||||| |||||||| ||||| ||||||||||| || | |||||||||||| Sbjct 1415125 GCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAGCACATGTTTTATA 1415066 Query 42506 AAATATTTTTCGTCCGGTGTTAATTTATTCCAA-TCATTGATATCTTTAGATATATCTAC 42564 |||| |||||| | ||||||| ||| || || || | ||| | |||| ||||| Sbjct 1415065 AAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAATCTAT 1415007 Query 42565 TTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATA 42624 |||||| | ||||||||||| || || || |||||||| | |||||| | ||| |||| Sbjct 1415006 TTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAATTCCATACTTCAGGATA 1414947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671135475177440