Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq6 132 5e-26 seq11 93.3 4e-14 >seq6 Length=837512 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | ||||||||||| | |||||||||||||| ||||| || || Sbjct 386948 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGAT 386889 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || |||||| | |||||| ||||| | || | | ||| ||||| || || Sbjct 386888 AATGTTCTACCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGG 386829 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || |||||| ||| | | ||| | || || | ||||| || Sbjct 386828 ATACCTTCTTTATCTTGAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACA 386769 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| ||| | || || ||||| |||||||||||||| ||||||||| || Sbjct 386768 TCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCATACCT 386718 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | |||||||| || | |||||||||||||| ||||||||||| Sbjct 386492 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCAGAT 386433 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || || || | |||||| ||||| | || | | ||| ||||| || || Sbjct 386432 AGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGA 386373 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || |||||| ||| | | ||| | || || | ||||| || Sbjct 386372 ATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGTTCAACA 386313 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| ||| | || || ||||| || |||||||| || ||||||||| || Sbjct 386312 TCAAGAGTAATTGTTTTTCCGGTTAAAGTTTTTACAAAGATTTGCATACCT 386262 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | |||||||| || | || ||||||||||| |||||||| || Sbjct 386720 CCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGAT 386661 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | |||||| || ||| | || | | ||| ||||| ||||| Sbjct 386660 AGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGA 386601 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || |||||| ||| | | ||| | || || | || || || Sbjct 386600 ATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAACA 386541 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| ||| | || || ||||| || ||||||||||| || |||||| || Sbjct 386540 TCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCATACCT 386490 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | ||||||||||| | |||||||||||||| ||||| || || Sbjct 386264 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGAT 386205 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || |||||| | ||| || |||||| | || | | ||| ||||| || || Sbjct 386204 AATGTTCTACCGTCTTCTAATTGCTTTCCAGCAAAAATTAATCTTTGTTGATCAGGTGGG 386145 Query 143078 ATGCCTTCTTTGTCGGTAATTTT 143100 || |||||||| || |||||| Sbjct 386144 ATACCTTCTTTATCTTGAATTTT 386122 Score = 84.2 bits (92), Expect = 2e-11 Identities = 200/299 (67%), Gaps = 5/299 (2%) Strand=Plus/Minus Query 157277 TCCTCGTAATGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCG-TTGAGCTTAGG 157335 || ||||| | | | || | | |||||| || ||||| | || || || ||| | || Sbjct 429881 TCTTCGTATTTTGTATATAATTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCT-GG 429823 Query 157336 ACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATAT 157395 ||| || ||||| |||||||| | ||| | ||||| | || | ||||||||||| Sbjct 429822 ACATTCATTAGGGCACATTAAAGTCCAGTTCTTATTTTCCTTTACTCTTTTCATAAATAA 429763 Query 157396 ATCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTT 157455 ||| || ||||| | ||| | | |||||||| ||| | ||||| | ||| || Sbjct 429762 ATCAGGTACCCAAATAGCATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATT 429703 Query 157456 TCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTG 157515 | | | | ||||| || | ||| || ||||||| |||||||| || || || Sbjct 429702 TTTTCTTAAATCTAAAAATTCAAAAATATCTGAATGCCATGGTTCAACATATACAGCAAA 429643 Query 157516 GGCTCCTTTTCGCTT---GCCACCTTGATCCACGTGACGCACCATATTATTAAAAACTC 157571 | ||||||| || ||||||||||| || | | | ||| ||||||||||| Sbjct 429642 AGAACCTTTTCTTTTTCCTCCACCTTGATCTACATATCTTGCTGTATCATTAAAAACTC 429584 >seq11 Length=1651515 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||| | || || |||||||| ||||| || || | ||| || ||||| Sbjct 1490879 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCT 1490938 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | |||||| ||||| | || | | ||| ||||| || || || |||||||| || Sbjct 1490939 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 1490998 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 |||||| ||| | | ||| | || || | ||||| || |||| ||| | || || Sbjct 1490999 ATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTT 1491058 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| ||||||||||| || |||||||| Sbjct 1491059 CCGGTTAATGTTTTTACAAAGATTTGCAT 1491087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507011586070080