Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 8e-16 >seq6 Length=837512 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| || ||||| || | ||| || ||||| || |||||||| |||||||| | Sbjct 386492 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCAGAT 386433 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | |||| | | ||||| | ||||| || || |||| | ||| || ||||| || Sbjct 386432 AGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGA 386373 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || ||||| || |||||| ||| || | | | |||||| || || Sbjct 386372 ATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGTTCAACA 386313 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||| ||||| || ||||||||||| ||||| |||||||| Sbjct 386312 TCAAGAGTAATTGTTTTTCCGGTTAAAGTTTTTACAAAGATTTGCAT 386266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414570556642936