Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq6 105 4e-18 seq11 96.9 2e-15 >seq6 Length=837512 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | || || ||||| || || || |||||||| || || || ||||| Sbjct 386949 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGA 386890 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || | ||| || ||||| |||||| || ||||| | ||| || || | || Sbjct 386889 TAATGTTCTACCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGG 386830 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || ||| ||| || ||| ||| || || |||| ||| Sbjct 386829 GATACCTTCTTTATCTTGAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAAC 386770 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || |||||||| || | |||||||||||||||||||| Sbjct 386769 ATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 386722 Score = 102 bits (112), Expect = 5e-17 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | || || || || || || || |||||||| || |||||||||| Sbjct 386493 ACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCAG- 386435 Query 33202 CAAATTGAGTTGGT-CATCC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 || | ||| | ||||| ||||| |||||| || ||||| | ||| || || | Sbjct 386434 ---ATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAG 386378 Query 33258 TGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 || || |||||||| || ||| ||| || ||| ||| || || |||| Sbjct 386377 GTGGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGTT 386318 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || ||||| || |||||||| || | ||||||||| || |||||||| Sbjct 386317 CAACATCAAGAGTAATTGTTTTTCCGGTTAAAGTTTTTACAAAGATTTGCAT 386266 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | || || || || || ||||| |||||||| || ||||| ||||| Sbjct 386721 ACCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGA 386662 Query 33202 CAAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | | ||| || || ||||| ||||| ||| ||||| | ||| || || | Sbjct 386661 TA----GTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAG 386606 Query 33258 TGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 || || |||||||| || ||| ||| || ||| ||| || || || | Sbjct 386605 GAGGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCT 386546 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || ||||| || ||||| || || | ||||||||||||||| ||||| Sbjct 386545 CAACATCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 386494 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | || || ||||| || || || |||||||| || || || ||||| Sbjct 386265 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGA 386206 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || | ||| || |||||||||||| ||| ||||| | ||| || || | || Sbjct 386205 TAATGTTCTACCGTCTTCTAATTGCTTTCCAGCAAAAATTAATCTTTGTTGATCAGGTGG 386146 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || ||| ||| || ||| ||| || ||| || | ||| Sbjct 386145 GATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCGGATGGCTCAAC 386086 Query 33322 GTCCAGAGTTATCGTTTTTCC 33342 || || ||||| |||||||| Sbjct 386085 ATCAAGGGTTATAGTTTTTCC 386065 >seq11 Length=1651515 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| || || ||||||||||| || || || ||||| || | | || || Sbjct 1490879 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCT 1490938 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277 ||||| |||||| || ||||| | ||| || || | ||| || |||||||| || | Sbjct 1490939 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 1490998 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | || ||| || ||| ||| || || |||| ||| || ||||| || ||| Sbjct 1490999 ATTTTTGC---TTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTT 1491055 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||||| || | |||||||| || |||||||| || Sbjct 1491056 TTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1491090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318775875014712