Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq4 217 2e-51 seq7 188 9e-43 seq3 89.7 6e-13 >seq4 Length=712013 Score = 217 bits (240), Expect = 2e-51 Identities = 414/604 (69%), Gaps = 23/604 (4%) Strand=Plus/Minus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||| |||||||||||| | || |||| | | ||||| ||||||| || || Sbjct 69738 AATTTTAATTTTGAAGAATTAGGTATAGGAGCATTAGATGAAGAATTTAAAACGATATTT 69679 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA 164511 ||| || | ||||| |||| | ||| | | ||||||||| | ||||| ||| Sbjct 69678 AGAAGAACCTTTGCAAGTAGAATATATCCAAATTATATAATAAAACAGTTAGGAATAAAA 69619 Query 164512 CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571 ||| | || || || ||||| |||| ||||||||| ||| ||||||||||| ||| || Sbjct 69618 CATGTGAAGGGTATGATATTATATGGTCCTCCTGGTACCGGAAAAACATTAATAGCTAGA 69559 Query 164572 TGCATTGCTCAAGCTTTTAAATC--GCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | | || | || || | | || ||| |||||| | ||||| |||||| ||| Sbjct 69558 CAAATAGGTAAAACATTAAATGCAAGAGAACCG--AAAATTATCAATGGGCCTGAAATAT 69501 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 | || || || |||||| | || |||| ||| || | || || ||| | ||||||||| Sbjct 69500 TAAATAAGTACGTAGGTCAATCTGAAGAAAATATTCGTAACTTATTTAAAGAGGCTGAAT 69441 Query 164690 AAGAACAAAAGAAAGCAGGTTTAGCTAGTAA--ATTACATGTTATTGTTTTTGATGAGAT 164747 || | || || | || || | | | ||||||| ||||| | || |||||||| Sbjct 69440 TGGAGTATAAACAATCTGG-AGAG-AATTCATTATTACATATTATTATATTAGATGAGAT 69383 Query 164748 AGATGCTCTTT---GCAAAAAACGTGGTGAT-AATAT-----------TATTCATGATGC 164792 |||||| ||| | ||| | || ||| | || | | | ||||| Sbjct 69382 AGATGCAATTTGTCGACAAAGAGGTAGTGCTGCATCTAGTGGATCAGGTGTAAATGATAG 69323 Query 164793 AGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAAT 164852 | |||||||| || | || ||||||||||| ||| | ||||||||||| || | Sbjct 69322 TATAGTTAATCAATTATTATCAAAAATAGATGGAGTAAATAGTTTAAATAATATACTATT 69263 Query 164853 TGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATT 164912 | |||||||| || || |||||||| ||||| || || ||| |||| |||||||| Sbjct 69262 AATTGGTATGACAAATAGAATAGATTTAATCGATGAAGCATTGTTAAGACCAGGTCGATT 69203 Query 164913 AGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGT 164972 ||||| | || |||||| ||||||| | |||||||| || ||||||| ||||| | Sbjct 69202 TGAATTACATATTGAAATATCATTACCCAATAAAGAAGGTCGGATTCAAATATTAAATAT 69143 Query 164973 TCAT 164976 |||| Sbjct 69142 TCAT 69139 >seq7 Length=1041357 Score = 188 bits (208), Expect = 9e-43 Identities = 428/630 (68%), Gaps = 23/630 (4%) Strand=Plus/Minus Query 6798 TGATCGAGTTAATTGTTCTTTTATAGCTTTTAT-ATGATCTAAATAAATATGAGCATCTC 6856 || || | |||| || |||||| |||||| | ||||| ||||| |||||||| || Sbjct 912572 TGTTCTATTTAACTGGACTTTTA-AGCTTTCAACATGATTATTATAAACATGAGCATTTC 912514 Query 6857 CTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTA 6916 | | ||| ||||||||| |||||| | || | |||| || || | |||||| | Sbjct 912513 CCAATACATGTATAAATTCAGCTGGTTGTAAATTACATACTTGTGCTATCATATATGTAA 912454 Query 6917 ATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGAT 6976 ||| | ||| ||||| | ||| || || ||||| | || | ||| |||||||||| Sbjct 912453 ATATAGAATAGGAAGCAATATTGAATGGAACACCAAGACCTAAATCACAAGATCTTTGAT 912394 Query 6977 AACATTG-ACAAGATAAAATATTGTCTATAGCATAAAATTGACACAATACATGACATGGA 7035 | ||| ||| ||||| | || | | ||||||||||||| || | |||||| ||| Sbjct 912393 A-CATAATACATGATAATTTTCCATCAAAAACATAAAATTGACATAAAATATGACAAGGA 912335 Query 7036 GGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAA--ATACGTCTAT 7093 ||||| | ||||||| ||| | |||||| ||| ||| ||| || |||||| Sbjct 912334 GGTAATGCCATTTGATCTAAATCTTTTACATTCCATGCA--CATAAAATAATTCGTCTA- 912278 Query 7094 CATTTGGATTTGTTTTTAATTTTGTT-ATAATTATTTGTAATTGATCTATACCCTGACCT 7152 ||| | | | |||||||||| || ||||| ||| ||| ||||| | ||| | | || Sbjct 912277 CATGTCGGATCGTTTTTAATTAAATTTATAATATTTTTTAACTGATCAACACCTTTATCT 912218 Query 7153 TCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAA 7212 | ||||| || ||| || | |||| | ||| ||||| || ||||||||||| || ||| Sbjct 912217 TTATAATCAGCATGCATATCTGTATATTCAGCACCAAAGTGCCTCCATTGAAATCCGTAA 912158 Query 7213 ATAGGACCTAAATCACCTTCTTCACGATG--ATTAAATCCTAATCGATTTAAATTAGATT 7270 || |||||||| ||| |||| | ||| || | ||||| | || |||| | Sbjct 912157 ATTGGACCTAAGTCATTAACTTCTCTATGAAATAATTTCCTATT--ATCTAAAAACTCTC 912100 Query 7271 TTGATCCATAAGCATCCCAAATATGTACAGAtttttttGATAA---ATTTAAAGAATTTG 7327 ||| |||| ||| ||||| || ||| ||||| | |||| |||| ||||| Sbjct 912099 TTGTCCCATTAGCTTCCCATATTCTTACGTTTTTTTCTAATAATGTATTT---CCATTTG 912043 Query 7328 TAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTG 7387 | ||| | | ||||||| | ||||| | || || | ||| | | |||||| Sbjct 912042 TTTCTCCCCTTATAAACCATAGCAACTCTTCAATGATACCTCTTACAAATAATTTTTTTG 911983 Query 7388 TAGTGAATAAAGGGA---ATGTACTTAAAT 7414 | || ||||| || | || |||||||| Sbjct 911982 TTGTTAATAATGGAAAATATTCACTTAAAT 911953 >seq3 Length=546028 Score = 89.7 bits (98), Expect = 6e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 19330 TAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTAC 19389 |||| | ||| || |||| || ||||||| |||| || ||||||||||| | Sbjct 422948 TAAAGTAAAAGTACGATCAGTTAGAATACCTCAAATTGGAGATAAGTTTGCAAGTAGGCA 423007 Query 19390 TGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGA 19449 || |||||||| ||| ||||| | ||| | ||||||||||| ||||| || Sbjct 423008 TGGACAAAAAGGTACAATCGGTATAACCTATAGAATGGAAGATATGCCATTTACATCTGA 423067 Query 19450 TGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 ||||| | | || ||| ||||||| || |||||||| ||||| ||| ||||| Sbjct 423068 TGGTACATTTCCTGATATTATTATGAATCCACATGCAGTTCCATCTCGTATGAC 423121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595868692910400