Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq6 149 6e-31 seq11 102 7e-17 >seq6 Length=837512 Score = 149 bits (164), Expect = 6e-31 Identities = 184/249 (74%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 94763 TTTTTA--AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || |||||||| |||| || || ||||| ||||| ||||| | Sbjct 386740 TTTTTACGAAAATTTGCATACCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTT 386681 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGAT 94878 |||| | ||| || || |||||||| | ||| || | ||||||||| |||| || Sbjct 386680 TTTGAATGTTGTAGTCAG--ATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAAT 386623 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 ||||||||| ||||| ||||||||||||||||| || | |||||| || || || | Sbjct 386622 TAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTC 386563 Query 94939 GACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 | || |||| | || || |||| ||||| ||||| || || | |||||| || || Sbjct 386562 AATGGTATCAGATGGCTCAACATCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTACGAA 386503 Query 94999 GATCTGCAT 95007 |||||||| Sbjct 386502 AATCTGCAT 386494 Score = 143 bits (158), Expect = 2e-29 Identities = 183/249 (73%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 94763 TTTTTA--AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| | | || |||||||| |||| || || ||||| || |||||||| | Sbjct 386512 TTTTTACGAAAATCTGCATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTT 386453 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGAT 94878 |||| | ||| ||||| |||||||| |||||| | |||||||| | || || Sbjct 386452 TTTGAATGTTGTAATCAG--ATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAAT 386395 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 ||||||||| ||||| || |||||||||||||| || | |||||| || || || | Sbjct 386394 TAATCTTTGTTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTC 386335 Query 94939 GACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 | ||| |||| | || || |||| || || |||||||| || | |||||| ||||| Sbjct 386334 AATAGTATCAGATGGTTCAACATCAAGAGTAATTGTTTTTCCGGTTAAAGTTTTTACAAA 386275 Query 94999 GATCTGCAT 95007 ||| ||||| Sbjct 386274 GATTTGCAT 386266 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| |||| || || || || || |||||||| ||||| | |||||| || Sbjct 386948 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAG-- 386891 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||| |||| | || || | |||||||| | || ||||||||||| ||||| || | Sbjct 386890 ATAATGTTCTACCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTG 386831 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | ||||||||||| || | |||||| || || ||| | | ||| || | | || | Sbjct 386830 GGATACCTTCTTTATCTTGAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAA 386771 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| || || |||||||| || | ||||| || || || ||||| Sbjct 386770 CATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 386722 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/179 (73%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 94756 TAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGA 94815 ||| | |||| ||| ||| || |||||||| |||| || || || || || ||||| Sbjct 386289 TAAAGTTTTTACAAAGATTTGCATACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGA 386230 Query 94816 TTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCA 94873 ||| ||||| | |||||| || ||| |||| | || || | || ||||| || Sbjct 386229 TTCTTTTTGAATGTTATAGTCAG--ATAATGTTCTACCGTCTTCTAATTGCTTTCCAGCA 386172 Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 || ||||||||||| ||||| || || ||||||||||| || | |||||| || || || Sbjct 386171 AAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTAAC 386113 >seq11 Length=1651515 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGAATCCTC 94857 ||||| || || || || || ||||| | |||||| || | | || | || | || || Sbjct 1490879 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCA-TCTTC 1490937 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 | |||||||| | || ||||||||||| ||||| || ||||| |||||||| || | Sbjct 1490938 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 1490997 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 |||||||| || || | | || |||| | || || |||| ||||| ||||| Sbjct 1490998 GATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 1491057 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | ||||| |||||||| ||||| Sbjct 1491058 TCCGGTTAATGTTTTTACAAAGATTTGCAT 1491087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448288711983840