Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq10 217 2e-51 >seq10 Length=1559237 Score = 217 bits (240), Expect = 2e-51 Identities = 622/944 (66%), Gaps = 31/944 (3%) Strand=Plus/Minus Query 21119 ATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttt-tttGA--CATA 21175 |||||| ||||||||||| | ||| |||||| | | | ||||||| ||||| |||| Sbjct 1415863 ATATTTTCTTAAAAATCAGTGTTTAA--AGAAAATACT-TGTTCTTTTCTTTGAGCCATA 1415807 Query 21176 ATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAAT 21235 | || |||||||||||| |||||| ||||| || |||||||| ||||||| || Sbjct 1415806 ACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAA 1415747 Query 21236 GATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGT 21295 ||||| | ||||| || ||||||||||| || | || | ||| ||||| | Sbjct 1415746 GATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAA 1415687 Query 21296 TCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATA 21355 | |||||||| ||| || |||||||| || |||||| |||| | | ||||||| Sbjct 1415686 CATTCTAATAATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCATT 1415627 Query 21356 CCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCA 21415 || || || | ||| | || || | ||| ||| |||||| || ||||| Sbjct 1415626 CCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCT 1415567 Query 21416 ACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAA-------- 21467 || ||||||| | | | | | || || | | | ||| | ||| Sbjct 1415566 TTAACTATATTTTGAA--CAACCTCTTCT---GGCA---ATTTATTTTCTAACAAGCTAT 1415515 Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 | || ||||| |||||| || || |||||||| ||||| || ||||||||| || Sbjct 1415514 AAATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAA 1415455 Query 21528 ATGTTAAACCGGGCA-TTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CC 21585 |||||||||| | | || || | | ||||| ||||||||||||| | |||| || || Sbjct 1415454 ATGTTAAACCATGTAATTTATTTTGT-TTTTTAAACCAAAATATTG-CACAAAAACTTCC 1415397 Query 21586 TGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTC 21645 ||| || || || || || ||| || || | || |||| | | | || ||| Sbjct 1415396 ACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAG-AG-TTC 1415339 Query 21646 TTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATC 21705 | ||| ||||||||| |||||||| ||| || | ||| || || | || Sbjct 1415338 GT-ATCGTTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTC 1415280 Query 21706 AATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNN 21765 |||||| | || | || | | || | |||| | || Sbjct 1415279 AATAGCATGAAATAAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAA 1415220 Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 |||||| ||||||| ||||||||||| | ||||| ||||| | ||||| | | ||| Sbjct 1415219 ACTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAA-CTTTTTGG 1415161 Query 21826 CTCTGAACATT-GAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCAT 21884 || | ||| | || || ||||| ||| || ||||| ||||||||||| Sbjct 1415160 CTTCAATTATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCAT 1415101 Query 21885 CACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATT 21944 |||| || ||||||||||| | | || ||||||||||| | ||| || | |||||| Sbjct 1415100 CACTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATT 1415041 Query 21945 TTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAA 22004 ||| | ||| ||||| |||||||||||| |||||||| |||||||| || Sbjct 1415040 TTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCT 1414981 Query 22005 TAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGA 22048 ||| |||||||| | | |||| | ||| ||| || || ||| Sbjct 1414980 CAGCTTTTTTATAAAAATTCCATACTTCAGGATACATAATAGGA 1414937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531897847950560