Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6 376 3e-99 seq10 165 1e-35 >seq6 Length=837512 Score = 376 bits (416), Expect = 3e-99 Identities = 1007/1525 (66%), Gaps = 37/1525 (2%) Strand=Plus/Minus Query 62324 ATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 62383 ||| |||||||| || |||||| ||| || || | | ||||| ||||| || Sbjct 430680 ATGAGGATTAACAACAAAAAATTCACCACTTAAAACACGTCTGTAATAAATGTTACTTGT 430621 Query 62384 ATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 62443 ||| ||||| | || ||||||||||| |||||||| | ||||| || || |||||||| Sbjct 430620 ATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGCGACGTTGAAGCTGTTGGCATAGG 430561 Query 62444 TGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCA 62503 ||| | | | | |||||| | || | | | || ||||| | ||||| ||||| Sbjct 430560 TGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTTTTTAATAAATCCCA 430501 Query 62504 ATTCCAAAGATC-----CGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTA 62558 || |||| | |||| | | ||||| || || | Sbjct 430500 ATCCCAATATTTATTATCGACTTTTG--CATTCCACATATCAAATTGTAATATTCCTTGG 430443 Query 62559 CTGGC-GTACGATCCTACATATGTATCGTATGGTCC--TTCCTTCTCAGCTAGTTCACAA 62615 || || | || | ||| ||||| || |||||||| || ||| | || | |||| | Sbjct 430442 CTTGCTGGACTA-CCTTGATATGATTCATATGGTCCACTTACTTGT--GCCAATTCAACA 430386 Query 62616 CTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATTTAGATCTTGTGC 62674 | ||||| ||| | ||||| || ||||| || || ||||| ||||| |||| || Sbjct 430385 GACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATTTAATTCTTTAGC 430327 Query 62675 TTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACA 62732 ||| ||| | || ||||||| |||| || ||||| | || ||||||||||| || Sbjct 430326 TTCTTCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACT 430269 Query 62733 CCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAA 62792 || || || |||||||||||||| ||||| || |||| |||||| || ||||||||| Sbjct 430268 CCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAACTGGATAATAA 430209 Query 62793 TTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTG 62852 || | || |||||||||| | |||||| ||| | ||| | ||| | | ||| Sbjct 430208 TTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATATAATTTT 430149 Query 62853 AGAAAATCAAA-----TCGCCCATCTAT-TACAAACATGTTCAAGGCAACAGATGCCAGA 62906 ||||| ||| | ||||| ||||| || || |||| || || | | Sbjct 430148 TTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATGGAAGCTAAA 430089 Query 62907 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 62966 |||||||| ||||| |||| || | ||||| || || ||| || | |||||| Sbjct 430088 TTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAAATTACTG 430029 Query 62967 CACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 63026 || || || ||||||||||||| |||||| || ||||| ||||| ||||| | Sbjct 430028 CATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCATCTTTATATAAC 429969 Query 63027 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC 63086 || |||| ||||||||| || || || || || || ||| | || | || Sbjct 429968 ATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAATCTTGTGC- 429910 Query 63087 TTTATTATAGATTTGTATC---TCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAAC 63143 | || | ||| | || ||||| ||||||| |||||| ||| ||| || Sbjct 429909 --AAGAATTGTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGTATATAATTTTTCAAAT 429852 Query 63144 TCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCT 63203 || || ||||| | || || |||||||||| || ||||| || | ||| | Sbjct 429851 TCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCATTAGGGCACATTAAAGTCCAGTTC 429792 Query 63204 CCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCT 63263 | ||||| |||| ||||||||| | |||||| | ||||| ||| ||||| ||| Sbjct 429791 TTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCA 429732 Query 63264 CTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCA 63323 | | ||| ||| || || || ||| ||| | | ||| | || | | |||||| Sbjct 429731 CGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCT 429672 Query 63324 GAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCT 63383 |||||||| ||||| | |||| || | | || | ||| ||| || |||||| Sbjct 429671 GAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCT 429612 Query 63384 ATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCA 63443 | ||||| || || | |||| ||||||| ||||| || | | ||| |||||||||||| Sbjct 429611 ACATATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCATTTGATATACCA 429552 Query 63444 TTGGTACCGGAGATAT-AGCTTCCACTG-GCACGAATATTACTAATTGATAGACCTATTC 63501 || || || ||| | || | || || | ||||| | | | |||||| | Sbjct 429551 TTAGTTCCTCTGATGTAAGAAT--TTTGAGCTCTAATATCTTGTACAGCCACACCTATAC 429494 Query 63502 CCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGC 63561 | ||||| ||||| || ||||| ||| | ||||| || ||| | ||||| ||||| Sbjct 429493 CTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTG 429434 Query 63562 TATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 63620 |||| ||| || ||| || ||| || |||||||||| | | ||||||| | Sbjct 429433 AATCAGATTTCATTGATAA-TAAAAAGCATGAAGACATTTGGGGTCTTGGTGTTCCCGAA 429375 Query 63621 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63680 |||||||| ||||||| ||| || ||||| |||||| || | || || || || || Sbjct 429374 TTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAATGATAAGTTTCT 429315 Query 63681 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63740 | ||| || | ||| | ||| ||||||| | || | |||||| | |||||| Sbjct 429314 AAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATAAATGCTGA 429255 Query 63741 GGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAA 63800 || | ||||| || || || || || || ||||| || |||| || |||||||| Sbjct 429254 GGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAATGTTTTAAAT 429195 Query 63801 CCAAAATAGTTGTATGAAAAGTCTC 63825 |||||||| | ||| ||| |||| Sbjct 429194 CCAAAATAATCGTAATTAAAATCTC 429170 >seq10 Length=1559237 Score = 165 bits (182), Expect = 1e-35 Identities = 323/473 (68%), Gaps = 6/473 (1%) Strand=Plus/Minus Query 33382 TTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCA 33441 ||||||| ||||||||| | | || |||| ||| || |||||||| || ||| Sbjct 1415428 TTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTTCGACACATGCA 1415369 Query 33442 AAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCG 33501 || | || ||| || || || | | || | |||||| || ||||| Sbjct 1415368 TTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCGTTTATCCATTTAGCTGCCCATAAT 1415309 Query 33502 GCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTA 33561 || || ||||||| || || |||| || |||| ||| | || | | || || Sbjct 1415308 GCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTCTCTTTC 1415249 Query 33562 CTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATG 33621 ||| ||| |||| |||| || || | |||||| |||| || || || ||||||| Sbjct 1415248 TCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGTATATTTTCAACA 1415189 Query 33622 GCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGT 33681 || || ||||| | || || | | || || | || ||||||||| | ||||| | Sbjct 1415188 GCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCTCTTAAAAAT--T 1415131 Query 33682 TCC--GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTT 33739 | | || |||||||| |||||||| ||||| ||||||||||| || | ||||||| Sbjct 1415130 TACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAGCACATGTT 1415071 Query 33740 TTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATATA 33798 ||||||||| |||||| | | ||| ||| ||| || || || | ||| | |||| | Sbjct 1415070 TTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAA 1415012 Query 33799 TCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCA 33851 |||| |||||| | ||||||||||| ||||| || |||||||| | ||||| Sbjct 1415011 TCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAATTCCA 1414959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943742643040