Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6 165 2e-35 seq7 161 3e-34 >seq6 Length=837512 Score = 165 bits (182), Expect = 2e-35 Identities = 428/645 (66%), Gaps = 7/645 (1%) Strand=Plus/Plus Query 363387 TATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGT 363446 |||||| |||| ||| || | || | || ||| ||| ||||| ||| | | ||| | Sbjct 429187 TATTTT-GGATTTAAAACATTAGAAAGGTCTTACTTATTACGTATTAATAATAAAATTAT 429245 Query 363447 TGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGA 363506 |||||| || |||||| | |||||| | || |||| || || ||| ||| |||| Sbjct 429246 TGAACGTCCTCAGCATTTATTAATGAGAGTATCTATAGGAATACATATAGATGATCTTGA 429305 Query 363507 TGCCGCGATTGAAACATATAAGCTTCTAAGTG-CTCGTGTATTC-ACGCACGCCACGCCA 363564 || | ||||| ||| | || | || | |||| || || || || || Sbjct 429306 AAAGGCTTTAGAAACTTATCA--TTTAATGTCACAAAAATATTTTACTCATGCTACTCCT 429363 Query 363565 ACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATG 363624 ||| | | ||| | ||||| | | || || |||||||| |||||| | || |||| Sbjct 429364 ACATTATTTAATTCGGGAACACCAAGACCCCAAATGTCTTCATGCTTTTTATTATCAATG 429423 Query 363625 AAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAG 363684 || ||||| || || ||||| ||||| ||| | ||| | ||||| | ||| || Sbjct 429424 AAATCTGATTCAATAGAAGGTATATTTGAAACATTAAAGCAATGTGCATTGATTAGTAAA 429483 Query 363685 AATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGC 363744 | ||||| || || ||||| | | || || || | || || || |||||| | Sbjct 429484 ACAGCAGGAGGTATAGGTGTGGCTGTACAAGATATTAGAGCTCAAAATTCTTACATCAGA 429543 Query 363745 GGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGC 363803 || || | || ||| || ||||| | || || ||| | | || ||| | |||| || Sbjct 429544 GGAACTAATGGTATA-TCAAATGGTTTAGTCCCGATGTTAAGAGTTTTTAATGATACAGC 429602 Query 363804 GAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCC 363863 || || || || || ||||||||||| | ||||| | |||||| | ||| | || || Sbjct 429603 AAGATATGTAGATCAAGGTGGAGGAAAAAGAAAAGGTTCTTTTGCTGTATATGTTGAACC 429662 Query 363864 TCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATT 363923 ||| | ||||||||||| ||| | || | | ||||| || ||||| ||||| Sbjct 429663 ATGGCATTCAGATATTTTTGAATTTTTAGATTTAAGAAAAAATCATGGTAAAGAAGAATT 429722 Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983 | | || |||||| | || ||||| ||||||| |||| |||||||| | || | Sbjct 429723 GAGAGCTCGTGATTTATTTTATGCTATTTGGGTACCTGATTTATTTATGAAAAGAGTAAA 429782 Query 363984 GGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGG 364028 || | |||||| ||| | | | ||||| | ||||||||||| Sbjct 429783 GGAAAATAAGAACTGGACTTTAATGTGCCCTAATGAATGTCCAGG 429827 >seq7 Length=1041357 Score = 161 bits (178), Expect = 3e-34 Identities = 460/694 (66%), Gaps = 16/694 (2%) Strand=Plus/Plus Query 111192 GAATATCAATATCTTCAGTTGATTTCTAAAGTACTAGAACATGGTGAATATCGAAG-TGA 111250 |||||||||||| | | | || | | | || || ||||| |||| ||| ||| Sbjct 911844 GAATATCAATATTTAAATGTCATATATGATATAATAATGCATGGA-AATAAACAAGATGA 911902 Query 111251 CAGAACGGGCACTGGTACCGTAAGTTTATTTGGAGAAACAATGCGTTTTAATCT--GTCA 111308 ||||| || |||| ||||| ||||||| | | ||| |||||| | || | Sbjct 911903 TAGAACAGGTGTTGGTGTATTAAGTAAATTTGGATATATGATGAAATTTAATTTAAGTGA 911962 Query 111309 ACTCATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAG-GGAATTGTCGAAGAACT 111367 | |||||||| | | |||||||| | || ||| ||| || || | ||||| | Sbjct 911963 AT--ATTTTCCATTATTAACAACAAAAAAATTAT-TTGTAAGAGGTATCATTGAAGAGTT 912019 Query 111368 TCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAAT 111427 || |||||||| | ||| ||||||| |||| | | || |||||| |||| ||| Sbjct 912020 GCTATGGTTTATAAGGGGAGAAACAAATGGAAATACATTATTAGAAAAAAACGTAAGAAT 912079 Query 111428 TTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGG---TCTTGTCGACAACGA 111484 ||||| | ||||| || | || ||| ||||| | | || | | || | | || Sbjct 912080 ATGGGAAGCTAATGGGACAAGAGAGTTTTTAGAT--AATAGGAAATTATTTC-ATAGAGA 912136 Query 111485 AGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAA 111544 || ||| | || ||| ||||||||||||||||| | ||||||||||| || || | Sbjct 912137 AGTTAATGACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCTGAATATAC 912196 Query 111545 AACCATGCACGACTCAT-ATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATC 111603 | ||||| | || || || | | || |||||| ||| | ||| | || || Sbjct 912197 AGATATGCATG-CTGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATATTATAAATT 912255 Query 111604 AAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCAT 111663 |||||| ||| | || || | | | || |||||| | |||||||||| ||| | | Sbjct 912256 TAATTAAAAACGATCCGACATGTAGACGAATTATTTTATGTGCATGGAATGTAAAAGATT 912315 Query 111664 TGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGA 111723 | || |||||||| | || || |||||| || | || || |||||||| || || | Sbjct 912316 TAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAA 912375 Query 111724 TGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATA 111783 | ||||| |||||||| ||||| |||| | |||||||||||||| || |||| Sbjct 912376 AATTATCATGTATTATGTATCAAAGATCTTGTGATTTAGGTCTTGGTGTTCCATTCAATA 912435 Query 111784 TTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTG 111843 |||| || | || |||| | | || || || | ||| | |||| | || Sbjct 912436 TTGCTTCCTATTCTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCAGCTG 912495 Query 111844 AATTCATTCACGTTATCGGAGATGCGCATGTTTA 111877 |||| || || || | ||| |||| |||||||| Sbjct 912496 AATTTATACATGTATTGGGAAATGCTCATGTTTA 912529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303346185547208