Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq6 91.5 1e-13 >seq6 Length=837512 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTC 131084 |||||||||| ||| || || ||||||||||| || || | | ||| | | ||| || Sbjct 386930 ACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGATAATGTTCTACC-GTCTTC 386872 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 || || || || ||| | ||||| | || || || || ||||| |||||||| || | Sbjct 386871 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCT-T 386813 Query 131145 GATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTT 131203 || ||| |||| | | | || | |||||| | | || | || | |||| |||| Sbjct 386812 GAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGTAATTGTTT 386753 Query 131204 TACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | ||||||| |||||||||||||| ||||| Sbjct 386752 TTCCGGTTAATGTTTTTACGAAAATTTGCAT 386722 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTC 131084 ||||| |||| ||| || || ||||||||||||||||| | | || | | | ||||| Sbjct 386474 ACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCAGATAGTGTTCTTCCA-TCCTC 386416 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 || || || || ||| | ||||| | || || || || || || |||||||| || | Sbjct 386415 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTATC-TT 386357 Query 131145 GATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTT 131203 || ||| |||| | | | || | |||||| | | || | || | |||| |||| Sbjct 386356 GAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGTTCAACATCAAGAGTAATTGTTT 386297 Query 131204 TACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | ||||||| ||||||||| || || ||||| Sbjct 386296 TTCCGGTTAAAGTTTTTACAAAGATTTGCAT 386266 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTC 131084 ||||| |||| ||||| || |||||||||||||| || | | || | | | || || Sbjct 386702 ACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCA-TCTTC 386644 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 || || || || || | ||||| | || || || ||||| || |||||||| || | Sbjct 386643 TAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCT-T 386585 Query 131145 GATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTT 131203 || ||| |||| | | | || | ||||| | | ||| | || | || | |||| Sbjct 386584 GAATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAACATCAAGAGTGATTGTTT 386525 Query 131204 TACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | ||||||| ||||||||||||||||||||| Sbjct 386524 TCCCGGTTAAAGTTTTTACGAAAATCTGCAT 386494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472010180328960