Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6 385 6e-102 seq10 181 1e-40 >seq6 Length=837512 Score = 385 bits (426), Expect = 6e-102 Identities = 1009/1525 (66%), Gaps = 37/1525 (2%) Strand=Plus/Minus Query 62179 ATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 62238 ||| |||||||| || |||||| ||| || || | | ||||| ||||| || Sbjct 430680 ATGAGGATTAACAACAAAAAATTCACCACTTAAAACACGTCTGTAATAAATGTTACTTGT 430621 Query 62239 ATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 62298 ||| ||||| | || ||||||||||| |||||||| | ||||| || || |||||||| Sbjct 430620 ATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGCGACGTTGAAGCTGTTGGCATAGG 430561 Query 62299 TGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCA 62358 ||| | | | | |||||| | || | | | || ||||| | ||||| ||||| Sbjct 430560 TGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTTTTTAATAAATCCCA 430501 Query 62359 ATTCCAAAGATC-----CGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTA 62413 || |||| | |||| | | ||||| || || | Sbjct 430500 ATCCCAATATTTATTATCGACTTTTG--CATTCCACATATCAAATTGTAATATTCCTTGG 430443 Query 62414 CTGGC-GTACGATCCTACATATGTATCGTATGGTCC--TTCCTTCTCAGCTAGTTCACAA 62470 || || | || | ||| ||||| || |||||||| || ||| | || | |||| | Sbjct 430442 CTTGCTGGACTA-CCTTGATATGATTCATATGGTCCACTTACTTGT--GCCAATTCAACA 430386 Query 62471 CTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATTTAGATCTTGCGC 62529 | ||||| ||| | ||||| || ||||| || || ||||| ||||| |||| || Sbjct 430385 GACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATTTAATTCTTTAGC 430327 Query 62530 TTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 62587 ||| ||| | || ||||||| |||| || ||||| | |||||||||||||| || Sbjct 430326 TTCTTCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACT 430269 Query 62588 CCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAA 62647 || || || |||||||||||||| ||||| || |||| |||||| || ||||||||| Sbjct 430268 CCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAACTGGATAATAA 430209 Query 62648 TTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTG 62707 || | || |||||||||| | |||||| ||| | ||| | ||| | | ||| Sbjct 430208 TTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATATAATTTT 430149 Query 62708 AGAAAATCAAA-----TCGCCCATCTAT-TACAAACATGTTCAATGCAACAGATGCCAGA 62761 ||||| ||| | ||||| ||||| || ||||||| || || | | Sbjct 430148 TTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATGGAAGCTAAA 430089 Query 62762 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 62821 |||||||| ||||| |||| || | ||||| || || ||| || | |||||| Sbjct 430088 TTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAAATTACTG 430029 Query 62822 CACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 62881 || || || ||||||||||||| |||||| || ||||| ||||| ||||| | Sbjct 430028 CATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCATCTTTATATAAC 429969 Query 62882 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC 62941 || |||| ||||||||| || || || || || || ||| | || | || Sbjct 429968 ATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAATCTTGTGC- 429910 Query 62942 TTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAAC 62998 | || | ||| | || |||||| ||||||| |||||| ||| ||| || Sbjct 429909 --AAGAATTGTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGTATATAATTTTTCAAAT 429852 Query 62999 TCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCT 63058 || || ||||| | | || |||||||||| || ||||| || | ||| | Sbjct 429851 TCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCATTAGGGCACATTAAAGTCCAGTTC 429792 Query 63059 CCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCT 63118 | ||||| |||| ||||||||| | |||||| | ||||| ||| ||||| ||| Sbjct 429791 TTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCA 429732 Query 63119 CTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCA 63178 | | ||| ||| || || || ||| ||| | | ||| | || | | |||||| Sbjct 429731 CGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCT 429672 Query 63179 GAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCT 63238 |||||||| ||||| | |||| || | | || | ||| ||| || |||||| Sbjct 429671 GAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCT 429612 Query 63239 ATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCA 63298 | ||||| || || | |||| ||||||| ||||| || | | |||||| ||| ||||| Sbjct 429611 ACATATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCATTTGATATACCA 429552 Query 63299 TTGGTCCCTGAGATAT-AGCTTCCACTG-GCACGAATATTACTAATTGATAGACCTATTC 63356 || || ||| ||| | || | || || | ||||| | | | |||||| | Sbjct 429551 TTAGTTCCTCTGATGTAAGAAT--TTTGAGCTCTAATATCTTGTACAGCCACACCTATAC 429494 Query 63357 CCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATAC 63416 | ||||| ||||| || ||||| ||| | ||||| || ||| | || || ||||| Sbjct 429493 CTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTG 429434 Query 63417 TATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 63475 |||| ||| || ||| || ||| || |||||||||| | | ||||||| | Sbjct 429433 AATCAGATTTCATTGATAA-TAAAAAGCATGAAGACATTTGGGGTCTTGGTGTTCCCGAA 429375 Query 63476 TTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63535 |||||||| ||||||| ||| |||||||| |||||| || | || || || || || Sbjct 429374 TTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAATGATAAGTTTCT 429315 Query 63536 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63595 | ||| || | ||| | ||| ||||||| | || | |||||| | |||||| Sbjct 429314 AAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATAAATGCTGA 429255 Query 63596 GGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAA 63655 || | ||||| || || || || || || ||||| || |||| || |||||||| Sbjct 429254 GGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAATGTTTTAAAT 429195 Query 63656 CCAAAATAGTTGTATGAAAAGTCTC 63680 |||||||| | ||| ||| |||| Sbjct 429194 CCAAAATAATCGTAATTAAAATCTC 429170 >seq10 Length=1559237 Score = 181 bits (200), Expect = 1e-40 Identities = 377/556 (68%), Gaps = 4/556 (1%) Strand=Plus/Minus Query 32667 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 32726 ||||| ||||| || || ||||||||||| ||||| || ||| || | || | Sbjct 1415500 AAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGT 1415441 Query 32727 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 32786 | | | ||||||| ||||||||| | ||| |||| ||| || |||||| Sbjct 1415440 AATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCT 1415381 Query 32787 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTT 32846 || || ||| || | || ||| || || || | | || | |||||| || Sbjct 1415380 TCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCGTTTATCCATTTA 1415321 Query 32847 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 32906 ||||| || || ||||||| || || | || ||||||| ||| | || Sbjct 1415320 GCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTT 1415261 Query 32907 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 32966 | | || || ||| ||| ||| ||||||| || | |||||| |||| || || Sbjct 1415260 AATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGT 1415201 Query 32967 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 || ||||||| || |||||||| | || || | | || || | || ||||||||| Sbjct 1415200 ATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCT 1415141 Query 33027 GTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33085 | ||||| | || ||||||||||| |||||||| ||||| ||||||||||| || Sbjct 1415140 CTTAAAAATT-TACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGC 1415082 Query 33086 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATAT 33144 | |||||||||||||||| |||||| | | ||| ||| ||| || || || | || Sbjct 1415081 TAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAAT 1415023 Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 33204 | | |||| ||| | |||||| | ||||||||||| ||||| || |||||||| | || Sbjct 1415022 CACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAAT 1414963 Query 33205 TCCAGATGTCATGATA 33220 |||| | ||| |||| Sbjct 1414962 TCCATACTTCAGGATA 1414947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633628483342400