Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq10 226 3e-54 >seq10 Length=1559237 Score = 226 bits (250), Expect = 3e-54 Identities = 580/866 (67%), Gaps = 23/866 (3%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||||| ||||||| || || ||||| | ||||||||||||||||| ||||||| Sbjct 1415810 CATAACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTG 1415751 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 |||||||| | | || | | | | |||||| || | | || ||||| | | | Sbjct 1415750 TAAAGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAA-ACTTTGGAGCAAC 1415692 Query 92908 CAACTCGTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCAC-AA 92965 | | | | | ||||||| |||||| |||||||| ||||| |||||||| || || || Sbjct 1415691 CTAAACATTCTAATAATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAA 1415633 Query 92966 TTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAA--ATCTTTCTCGATTACAA 93023 |||||||| | | | ||||| || || | || |||||||| | | ||| Sbjct 1415632 TTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCT--ACTTCAA 1415575 Query 93024 CGGCTTCTTTCA--AGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATT 93081 | |||||||| | | |||| | | || || | ||| ||| | | | | | | Sbjct 1415574 CTGCTTCTTTAACTATATTTTGAACAACCT-CT-TCTGGCAATTTATTTTCTAACAAGCT 1415517 Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 || ||||| || ||| || || ||||| ||||| |||| ||||| ||||| || Sbjct 1415516 ATAAATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACT 1415457 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 ||||||||||| |||| | |||| || | ||||||||||| | |||||| || Sbjct 1415456 AAATGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCC 1415397 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 | ||| ||||| ||||| || |||| || ||||| | ||| |||||| | | Sbjct 1415396 ACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAA---GAGTT 1415340 Query 93262 ATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC 93321 || | | |||||||| ||||| ||||| || || || |||| |||| Sbjct 1415339 CGTATCGTTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTC 1415280 Query 93322 GATAGCGTTAAAT--AGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 ||||| | |||| | |||||| ||| | | ||| | || || |||| ||||| Sbjct 1415279 AATAGCATGAAATAAATTTAATCT--CTCTTTCTCATCCCTAATATAATTATCAATTAAT 1415222 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 | | ||| ||||||| || | ||| || | || ||||| || | || || | | Sbjct 1415221 AAACTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTG 1415162 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTA-CGAGATTTTCATTGACTATACC 93498 ||||| | || || |||||| ||||| | ||| | | |||||| ||||| || Sbjct 1415161 GCTTCAATTATTTGTACTTCTCTTAAAAAT-TTACTAGCTAAATTTTCTAATACTATTCC 1415103 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 ||| ||||||||||| || | | ||| |||||||||||||| |||| | || | Sbjct 1415102 ATCACTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAA 1415043 Query 93559 CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGC 93618 || || | || | ||| |||| | ||| | |||||| |||||||||| || || Sbjct 1415042 TTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGC 1414983 Query 93619 TTCTGCTTTTTTGTACATATCCCATA 93644 || |||||||| || | || ||||| Sbjct 1414982 CTCAGCTTTTTTATAAAAATTCCATA 1414957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556857709422560