Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6 178 1e-39 seq11 141 8e-29 >seq6 Length=837512 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||||||||||| ||||| | |||||||| || ||| | | Sbjct 386266 ATGCAAATCTTTGTAAAAACTTTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCT 386325 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||| || || ||||||||||| |||||| Sbjct 386326 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCTGATCAA 386385 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || || || ||||| ||||||||| | || | || ||||||||| Sbjct 386386 CAAAGATTAATTTTCGCTGGAAAACAATTAGAGGATGGAAGAACACTATCTGATTACAAC 386445 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||||||| ||| |||| |||||||| |||| | |||||| Sbjct 386446 ATTCAAAAAGAATCTACCTTACACTTAGTTTTAAGATTAAGAGGAGGT 386493 Score = 168 bits (186), Expect = 6e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||||||||||| ||||| |||||||||| || || | | Sbjct 386494 ATGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATCACTCTTGATGTTGAGCCATCT 386553 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| ||||||||||| || || |||||||| || |||||| Sbjct 386554 GATACCATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCTGATCAA 386613 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || |||||||| ||||| ||||| ||| | || | || || |||||| Sbjct 386614 CAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAAC 386673 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||||||| || |||| |||||||| |||| | |||||| Sbjct 386674 ATTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGGT 386721 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| |||||||| ||||| | |||||||| || ||| | | Sbjct 386722 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 386781 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | ||| ||||||||||| || || ||||| ||||| |||||| Sbjct 386782 GATACTATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAA 386841 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || || || ||||| ||||| || | || | || || || ||| Sbjct 386842 CAAAGATTAATTTTCGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGACTATAAC 386901 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 |||||||||||||| ||| ||||||||||||| |||| | ||||||| Sbjct 386902 ATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGGTT 386950 Score = 120 bits (132), Expect = 3e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22246 GGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAA 22305 || ||||| | || ||||| || || | |||||||| | || || | ||| ||| Sbjct 386065 GGAAAAACTATAACCCTTGATGTTGAGCCATCCGATACCATTGAAAATGTTAAAGCTAAA 386124 Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 |||||||| || || ||||| ||||| ||||||||| | | || ||||| || || || Sbjct 386125 ATTCAAGATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTTGCTGGAAAGCAA 386184 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTA 22425 ||||| || | || | || || || ||||||||||||||||| ||| |||||||| Sbjct 386185 TTAGAAGACGGTAGAACATTATCTGACTATAACATTCAAAAAGAATCTACCTTACATTTA 386244 Query 22426 GTTTTGCGATTGCGCGGAGGT 22446 ||||| |||| | |||||| Sbjct 386245 GTTTTAAGATTAAGAGGAGGT 386265 >seq11 Length=1651515 Score = 141 bits (156), Expect = 8e-29 Identities = 167/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 22202 TTTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTC 22261 ||| ||| ||| || |||||||| ||||| ||||| |||||||| ||||| |||||| Sbjct 1491104 TTTTTACGTTTACGAAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTC 1491045 Query 22262 TTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGG 22321 |||| || ||| | | ||||| | || || | ||| |||||| ||||| || || | Sbjct 1491044 TTGATGTTGAACCATCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAG 1490985 Query 22322 GTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCA 22381 | ||||| || ||||||||| | | || || || || ||||| ||||| ||| | | Sbjct 1490984 GAATTCCCCCTGATCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAA 1490925 Query 22382 CCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 | | || || || |||||||||||||| || ||| ||||||| || Sbjct 1490924 CATTATCTGACTATAACATTCAAAAAGAGTCAACCTTACATTTGGT 1490879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725728746860