Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq13 91.5 3e-13 seq8 86.0 1e-11 >seq13 Length=2459074 Score = 91.5 bits (100), Expect = 3e-13 Identities = 60/65 (92%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 142059 GTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCGC 142117 |||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2026417 GTGGCGCAATTGGATAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAATCCCGC 2026476 Query 142118 CAGAG 142122 | ||| Sbjct 2026477 CGGAG 2026481 >seq8 Length=1320916 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 142510 TTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 ||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||| Sbjct 211531 TTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCAGGGGTTCGAGCCCC 211587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027830952893404