Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq6 122 7e-23 seq11 91.5 1e-13 >seq6 Length=837512 Score = 122 bits (134), Expect = 7e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || ||| |||||||| |||| |||||||||||||||||||||||||| Sbjct 386495 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCA 386436 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | ||| || | |||||| |||||| | || | | ||||| || || Sbjct 386435 GATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGT 386376 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| |||||||| || ||| ||| | |||| | | ||||| || || | | ||| Sbjct 386375 GGAATACCTTCTTTATCTTGAAT-TTTAGCTTTAACATTTTCAATAGTATCAGATGGTTC 386317 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| ||||| | |||||||||||| || ||||| Sbjct 386316 AACATCAAGAGTAATTGTTTTTCCGGTTAAAGTTTTTACAAAGATTTGCAT 386266 Score = 122 bits (134), Expect = 7e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || ||| |||||||| |||| || |||||||||||||||||||| || Sbjct 386723 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCA 386664 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | | |||||| | |||||| || || | || | | ||||| || ||| Sbjct 386663 GATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGA 386604 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| |||||||| || ||| ||| | |||| | | ||||| ||| || | | || Sbjct 386603 GGAATACCTTCTTTATCTTGAAT-TTTAGCTTTAACATTTTCAATGGTATCAGATGGCTC 386545 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| ||||| | ||||||||| ||||||||||| Sbjct 386544 AACATCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 386494 Score = 113 bits (124), Expect = 4e-20 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GC 114213 ||| || | || ||| ||||||||||||| |||||||||||||||||||| || || | Sbjct 386949 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGA 386890 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | || || | | ||||| | |||||| |||||| | || | | ||||| || || | Sbjct 386889 TAAT-GTTCTACCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTG 386831 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCG 114332 | || |||||||| || ||| ||| | |||| | | ||||| || || | | ||| Sbjct 386830 GGATACCTTCTTTATCTTGAAT-TTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCA 386772 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| ||||| | |||||||| ||||| ||||| Sbjct 386771 ACATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 386722 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 ||||| || | || ||| ||||||||||||| |||||||||||||||||||| || || Sbjct 386267 ATACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCA 386208 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 | | || || | | ||||| | ||| || ||||| | || | | ||||| || || Sbjct 386207 GATAAT-GTTCTACCGTCTTCTAATTGCTTTCCAGCAAAAATTAATCTTTGTTGATCAGG 386149 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATT 114330 || || |||||||| || ||| ||| | |||| | | ||||| ||| |||| | | Sbjct 386148 TGGGATACCTTCTTTATCTTGAAT-TTTAGCTTTAACATTTTCAATGGTATCGGATGGCT 386090 Query 114331 CGACGTCCACGGTCACCGTTTTGCC 114355 | || || | ||| | ||||| || Sbjct 386089 CAACATCAAGGGTTATAGTTTTTCC 386065 >seq11 Length=1651515 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTC 114232 || ||||||| || || |||||||||||||| || || | | || || | |||||| Sbjct 1490879 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAAT-GTTCTTCCATCTTC 1490937 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 | |||||| |||||| | || | | ||||| || || ||||| |||||||| || Sbjct 1490938 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 1490997 Query 114293 AATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTT 114351 || ||||| |||| | | ||||| || || | | ||| || || | || | |||| Sbjct 1490998 GAT-TTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTT 1491056 Query 114352 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||||| | ||||||||||| || ||||| Sbjct 1491057 TTCCGGTTAATGTTTTTACAAAGATTTGCAT 1491087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420132126547728