Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6 131 4e-25 seq11 122 2e-22 >seq6 Length=837512 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || |||||||| | | || | |||||||||||||||||||| ||||| Sbjct 386913 TTCTTTTTGAATGTTATAGTCAGATAATGTTCTACCGTCTTCTAATTGTTTTCCAGCGAA 386854 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | |||||| ||||||||||| || ||||| ||||| ||||| Sbjct 386853 AATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTGGCTTTAACGTT 386794 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| ||| | ||| || || || || || || || ||||| | || || || Sbjct 386793 TTCAATAGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTAC 386734 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 386733 GAAAATTTGCAT 386722 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || || ||||| | || || | || ||||||||||||||||| || || Sbjct 386685 TTCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAA 386626 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | || || ||||||||||| || ||||| ||||| || || Sbjct 386625 AATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATT 386566 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | || || || || ||||| || |||||||| | ||| || || Sbjct 386565 TTCAATGGTATCAGATGGCTCAACATCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTAC 386506 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 386505 GAAAATCTGCAT 386494 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || || || || | || || | ||| || |||||||||||||| ||||| Sbjct 386457 TTCTTTTTGAATGTTGTAATCAGATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAA 386398 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | ||| || ||||||||||| || ||||| ||||| || || Sbjct 386397 AATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATT 386338 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| ||| | ||| || || || || || || || ||||| | ||| || || Sbjct 386337 TTCAATAGTATCAGATGGTTCAACATCAAGAGTAATTGTTTTTCCGGTTAAAGTTTTTAC 386278 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 386277 AAAGATTTGCAT 386266 Score = 96.9 bits (106), Expect = 8e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || |||||||| | | || | |||||||||||||| ||||| || || Sbjct 386229 TTCTTTTTGAATGTTATAGTCAGATAATGTTCTACCGTCTTCTAATTGCTTTCCAGCAAA 386170 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | |||||| ||||||||||| || ||||| ||||| || || Sbjct 386169 AATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTAACATT 386110 Query 288402 TTCTATAGAATCG 288414 ||| || | |||| Sbjct 386109 TTCAATGGTATCG 386097 >seq11 Length=1651515 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| || |||||||| | | || | ||| ||||||||||||||||| ||||| Sbjct 1490897 TCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCAGCGAAA 1490956 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | | |||||| | || |||||||||||||| |||||||| ||||| || ||| Sbjct 1490957 ATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTAACATTT 1491016 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | ||| || || || ||||| || || ||||| | || || || Sbjct 1491017 TCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTTTTTACA 1491076 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 1491077 AAGATTTGCATT 1491088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179647689241032