Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020
16-11-23] 444 sequences; 18,919,436 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq6 100 3e-16
>seq6
Length=837512
Score = 100 bits (110), Expect = 3e-16
Identities = 154/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 138403 AAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG--T 138460
|||||||| |||| | || || ||||||||||||||||| ||||| | | |
Sbjct 386705 AAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAG--ATAGTGTTCTACCAT 386648
Query 138461 CCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGT 138520
| || | |||||| |||| | | |||| | ||||| || ||||| ||||||||||| |
Sbjct 386647 CTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTAT 386588
Query 138521 CGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579
| ||| |||| | ||||| | ||| | ||| || | | ||| || || | || |
Sbjct 386587 CT-TGAATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAACATCAAGAGTGATT 386529
Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||| || || | ||||||||| |||||||||||
Sbjct 386528 GTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 386494
Score = 82.4 bits (90), Expect = 8e-11
Identities = 161/233 (69%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC 138443
||| || |||| || | ||||||||||||| | | || || ||||||||||| |||||
Sbjct 386952 GCAACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTC 386893
Query 138444 -GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCG 138502
| | || || | ||| || | |||||| || | | |||| | ||||| || |
Sbjct 386892 AGATAAT-GTTCTACCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAG 386834
Query 138503 GAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGAC 138561
| || ||||||||||| || ||| |||| | ||||| | ||| | || || | |
Sbjct 386833 GTGGGATACCTTCTTTATC-TTGAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGT 386775
Query 138562 TCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| || || | || | ||||| || || | |||||||| ||||| |||||
Sbjct 386774 TCAACATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 386722
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496259645743680
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |