Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6 127 2e-24 seq11 116 3e-21 >seq6 Length=837512 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| || | || ||||| ||||| || || ||||| | ||| | | Sbjct 386480 CTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCAGATAGTGTTCTTCCA 386421 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||||||||| ||| | || |||| ||| || || || ||||| ||||||||| Sbjct 386420 TCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTA 386361 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||||||||| ||| | ||| | || || || | || || || ||||||| Sbjct 386360 TCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGTTCAACATCAAGAGTAATT 386301 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||| |||||||||||| |||||||| Sbjct 386300 GTTTTTCCGGTTAAAGTTTTTACAAAGATTTGCAT 386266 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| || | || ||||| ||||| || || || || | ||| || | Sbjct 386708 CTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCA 386649 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||||||||| || | || |||| ||| || || || ||||| ||||||||| Sbjct 386648 TCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTA 386589 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||||||||| ||| | ||| | ||| || || | ||| || || ||||| | Sbjct 386588 TCTTGAATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAACATCAAGAGTGATT 386529 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||| ||||||||| ||||| ||||| Sbjct 386528 GTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 386494 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| ||| | || ||||| ||||| || ||||| || | ||| || Sbjct 386936 CTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGATAATGTTCTACCG 386877 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||||||||| ||| | || |||| ||| || || || || || ||||||||| Sbjct 386876 TCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTA 386817 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||||||||| ||| | ||| | || || || | || || || ||||||| Sbjct 386816 TCTTGAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGTAATT 386757 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||| |||||||| ||||||||||| Sbjct 386756 GTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 386722 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| ||| | || ||||| ||||| || ||||| || | ||| || Sbjct 386252 CTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGATAATGTTCTACCG 386193 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||| ||||| || | || |||| ||| || || || || || ||||||||| Sbjct 386192 TCTTCTAATTGCTTTCCAGCAAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTA 386133 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||||||||| ||| | ||| | ||| ||||| | ||| || || || || | Sbjct 386132 TCTTGAATTTTAGCTTTAACATTTTCAATGGTATCGGATGGCTCAACATCAAGGGTTATA 386073 Query 45306 GTTTTGCC 45313 ||||| || Sbjct 386072 GTTTTTCC 386065 >seq11 Length=1651515 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 ||||| || ||||| || ||||| || | ||| | ||| || ||||||||||| Sbjct 1490891 GTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 1490950 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 ||| | || |||| ||| || || || ||||| |||||||||||||| |||||| ||| Sbjct 1490951 GCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTA 1491010 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | ||| | || || || | || || || ||||| | ||||| ||||||| ||| Sbjct 1491011 ACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1491070 Query 45324 TTTACAAAAATTTGCAT 45340 |||||||| |||||||| Sbjct 1491071 TTTACAAAGATTTGCAT 1491087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000691382240