Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020
16-11-23] 444 sequences; 18,919,436 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq6 134 2e-26
>seq6
Length=837512
Score = 134 bits (148), Expect = 2e-26
Identities = 712/1128 (63%), Gaps = 12/1128 (1%)
Strand=Plus/Plus
Query 111870 CATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATT 111929
|| ||| | ||||| | || ||| || ||||| || |||||| |||| ||||| |
Sbjct 429511 CAAGATATTAGAGCTCAAAATTCTTACATCAGAGGAACTAATGGTATATCAAATGGTTTA 429570
Query 111930 ATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTC-- 111987
| || ||| | | || ||||| | ||||| | |||||| | |||| ||| |
Sbjct 429571 GTCCCGATGTTAAGAGTTTTTAATGATACAGCAAGATATGTAGATCAAGGTGGAGGAAAA 429630
Query 111988 -GCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTT 112046
| || || ||| | || || ||| |||| |||||||| | ||||| | || || |
Sbjct 429631 AGAAAAGGTTCTTTTGCTGTATATGTTGAACCATGGCATTCAGATATTTTTGAATTTTTA 429690
Query 112047 GAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTC 112106
|| || | || || ||| | || || | | || ||| | || | ||| |
Sbjct 429691 GATTTAAGAAAAAATCATGGTAAAGAAGAATTGAGAGCTCGTGATTTATTTTATGCTATT 429750
Query 112107 TGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGT 112166
||| | || ||| | || ||||| ||||| |||| | | || ||| || | | ||
Sbjct 429751 TGGGTACCTGATTTATTTATGAAAAGAGTAAAGGAAAATAAGAACTGGACTTTAATGTGC 429810
Query 112167 CCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACA 112226
|| | | || || | || || |||||| || |||||| | || |||
Sbjct 429811 CCTAATGAATGTCCAGGCTTAAGTGAAACCTGGGGTGAAGAATTTGAAAAATTATATACA 429870
Query 112227 AAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCT 112286
|| ||||| ||||||| || | | || | | || ||| | ||| |||
Sbjct 429871 AAATACGAAGAAGAAAATCTTGGAAAAAAAACAATTCTTGCACAAGATTTATGGTTTGCT 429930
Query 112287 ATTCT-CAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAA 112345
|| | ||| | |||| || |||||| |||||||||| | || ||||| || |||||
Sbjct 429931 ATATTACAAAGC-CAAATAGAAACTGGTGTACCATATATGTTATATAAAGATGCATGTAA 429989
Query 112346 C-CAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAA 112404
| ||| | |||||||| ||||| || || || | || | ||| ||||
Sbjct 429990 TTCTAAATCG-AATCAAAAAAATTTAGGAACAATTAAATGCAGTAATTTATGTTGTGAAA 430048
Query 112405 TCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCC 112464
| | |||| |||| ||||| ||||| ||||| | || || || || |
Sbjct 430049 TTATTGAATATACATCACCTGATGAAGTAGCTGTTTGTAATTTAGCTTCCATTGCATTAT 430108
Query 112465 CCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGA 112524
||| | ||| ||| ||| | ||| |||| ||| | ||||| | | || |||| |
Sbjct 430109 GCAAATTTGTTGATAGAGAAAAAAAAGAATTTAATTTTAAAAAATTATATGATATTACTA 430168
Query 112525 AAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTG 112584
||| | | || | ||| || | | | ||||||| ||||||| ||| || ||| | |
Sbjct 430169 AAATTATTACTAGAAATTTAGATAAAATTATTGAAAGAAATTATTATCCAGTTAAAGAAG 430228
Query 112585 CTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATG 112644
| | ||| |||| ||||| | || ||||| | || || ||||| | || |||
Sbjct 430229 CGGAAAGATCAAATAAAAGACATAGACCTATTGGAATAGGAGTACAAGGATTAGCAGATA 430288
Query 112645 TATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTA 112704
||| || |||| | | ||| ||| || || ||||| || ||| | ||| | |
Sbjct 430289 CATTTATGCTTTTAAGATATCCATATGAATCTGAAGAAGCTAAAGAATTAAATAGAAGAA 430348
Query 112705 TATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATG 112764
||||||| || |||||| | || ||| | || | | || |||||| | || ||
Sbjct 430349 TATTTGAAACTATGTATTATGCTGCTTTAGAAATGTCTGTTGAATTGGCACAAGTAAGTG 430408
Query 112765 GTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGT 112824
| ||||||||| | | | | ||| |||||| ||||| | | |||||||||||||
Sbjct 430409 GACCATATGAATCATATCAAGGTAGTCCAGCAAGCCAAGGAATATTACAATTTGATATGT 430468
Query 112825 GGGAAGGTGAGACCAAGCTTCACTA---CGACTGGGACGCTCTCAAGGAACGCATCAAGG 112881
|| | | | | | | | || || ||||| | | || || | |||
Sbjct 430469 GGAATGCAAAAGTCGATAATAAATATTGGGATTGGGA-TTTATTAAAAAAAAAAATAAGT 430527
Query 112882 AGA-AGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAA 112940
| | | || | | || |||| | | ||||| ||||||||||| || || | |||
Sbjct 430528 AAACATGGATTAAGAAATTCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACGTCGCAA 430587
Query 112941 ATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTAT 112988
|| || || |||||||||| ||||||||| || || | ||||| |||
Sbjct 430588 ATTTTAGGAAATAATGAATCCTTTGAACCATATACAAGTAACATTTAT 430635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620738954879680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |