Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq6 134 2e-26 >seq6 Length=837512 Score = 134 bits (148), Expect = 2e-26 Identities = 712/1128 (63%), Gaps = 12/1128 (1%) Strand=Plus/Plus Query 111870 CATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATT 111929 || ||| | ||||| | || ||| || ||||| || |||||| |||| ||||| | Sbjct 429511 CAAGATATTAGAGCTCAAAATTCTTACATCAGAGGAACTAATGGTATATCAAATGGTTTA 429570 Query 111930 ATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTC-- 111987 | || ||| | | || ||||| | ||||| | |||||| | |||| ||| | Sbjct 429571 GTCCCGATGTTAAGAGTTTTTAATGATACAGCAAGATATGTAGATCAAGGTGGAGGAAAA 429630 Query 111988 -GCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTT 112046 | || || ||| | || || ||| |||| |||||||| | ||||| | || || | Sbjct 429631 AGAAAAGGTTCTTTTGCTGTATATGTTGAACCATGGCATTCAGATATTTTTGAATTTTTA 429690 Query 112047 GAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTC 112106 || || | || || ||| | || || | | || ||| | || | ||| | Sbjct 429691 GATTTAAGAAAAAATCATGGTAAAGAAGAATTGAGAGCTCGTGATTTATTTTATGCTATT 429750 Query 112107 TGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGT 112166 ||| | || ||| | || ||||| ||||| |||| | | || ||| || | | || Sbjct 429751 TGGGTACCTGATTTATTTATGAAAAGAGTAAAGGAAAATAAGAACTGGACTTTAATGTGC 429810 Query 112167 CCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACA 112226 || | | || || | || || |||||| || |||||| | || ||| Sbjct 429811 CCTAATGAATGTCCAGGCTTAAGTGAAACCTGGGGTGAAGAATTTGAAAAATTATATACA 429870 Query 112227 AAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCT 112286 || ||||| ||||||| || | | || | | || ||| | ||| ||| Sbjct 429871 AAATACGAAGAAGAAAATCTTGGAAAAAAAACAATTCTTGCACAAGATTTATGGTTTGCT 429930 Query 112287 ATTCT-CAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAA 112345 || | ||| | |||| || |||||| |||||||||| | || ||||| || ||||| Sbjct 429931 ATATTACAAAGC-CAAATAGAAACTGGTGTACCATATATGTTATATAAAGATGCATGTAA 429989 Query 112346 C-CAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAA 112404 | ||| | |||||||| ||||| || || || | || | ||| |||| Sbjct 429990 TTCTAAATCG-AATCAAAAAAATTTAGGAACAATTAAATGCAGTAATTTATGTTGTGAAA 430048 Query 112405 TCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCC 112464 | | |||| |||| ||||| ||||| ||||| | || || || || | Sbjct 430049 TTATTGAATATACATCACCTGATGAAGTAGCTGTTTGTAATTTAGCTTCCATTGCATTAT 430108 Query 112465 CCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGA 112524 ||| | ||| ||| ||| | ||| |||| ||| | ||||| | | || |||| | Sbjct 430109 GCAAATTTGTTGATAGAGAAAAAAAAGAATTTAATTTTAAAAAATTATATGATATTACTA 430168 Query 112525 AAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTG 112584 ||| | | || | ||| || | | | ||||||| ||||||| ||| || ||| | | Sbjct 430169 AAATTATTACTAGAAATTTAGATAAAATTATTGAAAGAAATTATTATCCAGTTAAAGAAG 430228 Query 112585 CTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATG 112644 | | ||| |||| ||||| | || ||||| | || || ||||| | || ||| Sbjct 430229 CGGAAAGATCAAATAAAAGACATAGACCTATTGGAATAGGAGTACAAGGATTAGCAGATA 430288 Query 112645 TATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTA 112704 ||| || |||| | | ||| ||| || || ||||| || ||| | ||| | | Sbjct 430289 CATTTATGCTTTTAAGATATCCATATGAATCTGAAGAAGCTAAAGAATTAAATAGAAGAA 430348 Query 112705 TATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATG 112764 ||||||| || |||||| | || ||| | || | | || |||||| | || || Sbjct 430349 TATTTGAAACTATGTATTATGCTGCTTTAGAAATGTCTGTTGAATTGGCACAAGTAAGTG 430408 Query 112765 GTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGT 112824 | ||||||||| | | | | ||| |||||| ||||| | | ||||||||||||| Sbjct 430409 GACCATATGAATCATATCAAGGTAGTCCAGCAAGCCAAGGAATATTACAATTTGATATGT 430468 Query 112825 GGGAAGGTGAGACCAAGCTTCACTA---CGACTGGGACGCTCTCAAGGAACGCATCAAGG 112881 || | | | | | | | || || ||||| | | || || | ||| Sbjct 430469 GGAATGCAAAAGTCGATAATAAATATTGGGATTGGGA-TTTATTAAAAAAAAAAATAAGT 430527 Query 112882 AGA-AGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAA 112940 | | | || | | || |||| | | ||||| ||||||||||| || || | ||| Sbjct 430528 AAACATGGATTAAGAAATTCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACGTCGCAA 430587 Query 112941 ATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTAT 112988 || || || |||||||||| ||||||||| || || | ||||| ||| Sbjct 430588 ATTTTAGGAAATAATGAATCCTTTGAACCATATACAAGTAACATTTAT 430635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620738954879680