Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 4e-15 >seq6 Length=837512 Score = 96.9 bits (106), Expect = 4e-15 Identities = 227/342 (66%), Gaps = 3/342 (1%) Strand=Plus/Minus Query 110698 TCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTA 110757 || ||||| || | ||||| || ||||||||||| | ||| ||||| | || || || Sbjct 429692 TCTAAAAATTCAAAAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTT 429633 Query 110758 C---GACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGA 110814 | | || | || | ||||| | |||||| |||| || || || | ||| || Sbjct 429632 CTTTTTCCTCCACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATCGGG 429573 Query 110815 ATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCG 110874 | | |||| ||| |||||| || || || || || || | || | ||| || Sbjct 429572 ACTAAACCATTTGATATACCATTAGTTCCTCTGATGTAAGAATTTTGAGCTCTAATATCT 429513 Query 110875 TGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTA 110934 || | | || ||| ||||| || || |||||||| |||||| | | | ||| Sbjct 429512 TGTACAGCCACACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTT 429453 Query 110935 CCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGA 110994 || | ||||| || || ||||| | || | | | || |||||| |||||||| || Sbjct 429452 TCAAATATACCTTCTATTGAATCAGATTTCATTGATAATAAAAAGCATGAAGACATTTGG 429393 Query 110995 GGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGA 111036 || | || ||||||| ||| || | |||||| || |||||| Sbjct 429392 GGTCTTGGTGTTCCCGAATTAAATAATGTAGGAGTAGCATGA 429351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588972731183200