Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6 114 2e-20 >seq6 Length=837512 Score = 114 bits (126), Expect = 2e-20 Identities = 331/501 (66%), Gaps = 9/501 (2%) Strand=Plus/Minus Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993 ||| ||||| | || || ||||||||| |||||||||| || || ||||| | || || Sbjct 430635 ATAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGCGACGTTGA 430576 Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCT-TTTCCTTGATGCGTT 106052 ||||||||||| ||||| | | |||| || | | || | ||| ||| | || Sbjct 430575 AGCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTT 430516 Query 106053 CCTTGAGAACATCCCAGTCG---TAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATT 106109 || | || |||||| || || || | | || | | |||||||||||||| Sbjct 430515 TTTTAATAA-ATCCCAATCCCAATATTTATTATCGACTTTTGCATTCCACATATCAAATT 430457 Query 106110 GAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAG 106169 | | | |||||| | ||| ||| | | ||| ||||| | || ||| | Sbjct 430456 GTAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGTG 430397 Query 106170 CCAATTCA-CAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 106228 |||||||| ||| | || | | || | |||||| |||||||| || | ||| Sbjct 430396 CCAATTCAACAGA-CATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATTT 430338 Query 106229 ATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGA 106288 | || || ||||| || || ||| ||| || | | | |||||| ||| || | Sbjct 430337 AATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAAT 430278 Query 106289 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCTCAAC 106347 ||||| || || | ||||||||||| |||| |||| || ||||| ||| | ||| Sbjct 430277 CCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTC-CGCTTCTTTAAC 430219 Query 106348 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 106407 |||||| ||||||| ||||| | | | || |||| | |||| ||| || || || || Sbjct 430218 TGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATC 430159 Query 106408 ATGAAGTTTTTCATAATCAAA 106428 || | ||||| | ||| ||| Sbjct 430158 ATATAATTTTTTAAAATTAAA 430138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589977525606560