Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq6 149 1e-30 seq11 129 1e-24 >seq6 Length=837512 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | ||| | || || ||||||||||| |||||||| | || || Sbjct 386487 TCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCAGATAGTGT 386428 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || | || || || ||||| || | || |||||| || || ||||| || Sbjct 386427 TCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGAATACC 386368 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||||||||| || || || ||||| || || || ||| || ||||| Sbjct 386367 TTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGTTCAACATCAAG 386308 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || ||||| || ||||||||||| || | |||||| Sbjct 386307 AGTAATTGTTTTTCCGGTTAAAGTTTTTACAAAGATTTGCAT 386266 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | ||| | ||| || ||||||||||| ||||| || | || || Sbjct 386715 TCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGATAGTGT 386656 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | || || || || || || | || |||||| || |||||||| || Sbjct 386655 TCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGAATACC 386596 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||||||||| || || || |||||||| || || || || ||||| Sbjct 386595 TTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAACATCAAG 386536 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || || || |||||||||||||| | ||||| Sbjct 386535 AGTGATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 386494 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | || | || || ||||||||||| || || || | | || Sbjct 386943 TCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGATAATGT 386884 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | || || || ||||| || | || |||||| || || || || || Sbjct 386883 TCTACCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGGATACC 386824 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||||||||| || ||||| ||||| || || || ||| || ||||| Sbjct 386823 TTCTTTATCTTGAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACATCAAG 386764 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || ||||| || || ||||||||||| | |||||| Sbjct 386763 AGTAATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 386722 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | || | || || ||||||||||| || || || | | || Sbjct 386259 TCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGATAATGT 386200 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | ||||| || || || || | || |||||| || || || || || Sbjct 386199 TCTACCGTCTTCTAATTGCTTTCCAGCAAAAATTAATCTTTGTTGATCAGGTGGGATACC 386140 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||||||||| || || || |||||||| || || || || ||||| Sbjct 386139 TTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCGGATGGCTCAACATCAAG 386080 Query 195099 GGTAACCGTCTTTCCTG 195115 ||| | || ||||||| Sbjct 386079 GGTTATAGTTTTTCCTG 386063 >seq11 Length=1651515 Score = 129 bits (142), Expect = 1e-24 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || |||||||||||||| || || || | | ||||| |||||||| | || || || Sbjct 1490891 GTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 1490950 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || | || |||||| || || ||||| |||||||| ||||| |||||| || Sbjct 1490951 GCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTA 1491010 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| || || || ||| || ||||| || | || ||||| || || ||| Sbjct 1491011 ACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1491070 Query 195124 TTTACGAACACTTGCATTT 195142 ||||| || | |||||||| Sbjct 1491071 TTTACAAAGATTTGCATTT 1491089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109475288436548