Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6 535 5e-147 seq10 329 4e-85 >seq6 Length=837512 Score = 535 bits (592), Expect = 5e-147 Identities = 1146/1707 (67%), Gaps = 42/1707 (2%) Strand=Plus/Minus Query 47123 CTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTC 47182 ||| ||||| || ||| | |||||| ||||| || | |||| ||||| || || Sbjct 430872 CTGGTCAATGAAAATACCACGATCAGCAGCCATGTCAATAATATTTTTTTGTTTGATTTC 430813 Query 47183 CCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGAT---TAGTATTTTGAATAGA 47239 ||| || |||||||| | | ||| | ||| || | | || ||| ||||| | Sbjct 430812 CCAAACGGTTTTATACAACTCTTTCAAGTCACTAGGTATTTCGCTAATATATTGAACA-- 430755 Query 47240 TCCTCCgttttctataatt--ttgttttttaat-tcatttgaccaaagttttcgttcagt 47296 | ||| || | |||| ||||| ||| || || | |||||| || ||| Sbjct 430754 -CTTCCATTATGGGCAATTAATTGTTGTTTCATATCTTCATCCCAAAGACCTCTATCAAA 430696 Query 47297 taatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCT 47356 | |||||| | |||||||||||||| |||||| ||| || || | | | Sbjct 430695 AAGATCTTTTAACAAATGAGGATTAACAACAAAAAATTCACCACTTAAAACACGTCTGTA 430636 Query 47357 ATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGA 47416 ||| || ||||||||||||||||| | |||||||||||||| |||||||| | ||||| Sbjct 430635 ATAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGCGACGTTGA 430576 Query 47417 TGCTGTAGGCATGGATGCAACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCTNNN 47475 ||||| ||||| | ||| | || ||| | ||||||| ||||| ||| ||| | Sbjct 430575 AGCTGTTGGCATAGGTGCTAA-AAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTT 430517 Query 47476 NNNNNNNNNGTTTCCAATCCCAA-AGATCTGATGGAACAA--CATTCCAAAAATCATATT 47532 | |||||||||| | | | || || ||||||| | |||| ||| Sbjct 430516 TTTTTAATAAATCCCAATCCCAATATTTATTATCGACTTTTGCATTCCACATATCAAATT 430457 Query 47533 GAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAG 47592 | | ||||||| ||| ||| ||| | ||||| || ||| || || || || | Sbjct 430456 GTAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGTG 430397 Query 47593 CGAGTTCA-CA-ACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTT 47650 | | |||| || || | ||| || ||| |||||| || |||||||||||| || | || Sbjct 430396 CCAATTCAACAGACAT--TTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATT 430339 Query 47651 TAGATTCCTT-GCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCA 47709 || |||| || |||||| |||||| | ||||| ||||||||||| | Sbjct 430338 TA-ATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTA 430280 Query 47710 ATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTA 47769 ||||||| || || || ||||| |||||||| ||||||| || || |||||| | Sbjct 430279 ATCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAA 430220 Query 47770 ATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTT 47829 |||||| | ||| | || |||||||||| || | ||| | Sbjct 430219 CTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATAT 430160 Query 47830 CTCTTAATTTATTAAAATCAAA--CTTGTTATT---TAT-AACAAACCTATTAAGTGCTA 47883 | |||||| ||||||| ||| ||| || || ||| |||||| | | ||| | Sbjct 430159 CATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAA 430100 Query 47884 TAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCAC 47943 | || |||| |||||| |||||||| |||| || ||||||| || |||||| || Sbjct 430099 TGGAAGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAAC 430040 Query 47944 ATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGC 48001 ||| ||||| ||||| || || || ||||||| ||||| ||| | ||||||| Sbjct 430039 ATAAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAAT--TACATGC 429982 Query 48002 GTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCA 48061 || || || | |||| | ||| ||||||||||| || || | |||| || Sbjct 429981 ATCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAG-----CA 429927 Query 48062 AACAGTCCTAGCCTTTATAACAGCTCTAGCTTT------ATTATCATGTTCGTATTTAGT 48115 ||| | | | | | || | | | ||| ||| || | ||||||||| || Sbjct 429926 AACCATAA-ATCTTGTGCAAGAATTGTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGT 429868 Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175 |||||| || |||||||| || || | | | ||| || |||||||||||||| || Sbjct 429867 ATATAATTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCATTAGGGCA 429808 Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235 ||| || | ||| | || || | |||||||| ||||||||| ||| |||| ||||| Sbjct 429807 CATTAAAGTCCAGTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAAT 429748 Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295 ||| ||||||||| | || ||| | |||||| || ||| ||| || | | || | Sbjct 429747 AGCATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAA 429688 Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355 ||| || | ||||| | |||||||||||| | ||||| || | |||| || ||| Sbjct 429687 AAATTCAAAAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTT 429628 Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415 || |||||||||| |||||| || |||| ||| ||||||||||||| ||||| | Sbjct 429627 TCCTCCACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAA 429568 Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT 48475 |||||||||||||||||| ||||| || ||| |||||| |||| | Sbjct 429567 ACCATTTGATATACCATTAGTTCCTCTGATGTAAGAATTTTGAGCTCTAATATCTTGTAC 429508 Query 48476 TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATA 48535 | | ||||||||| ||||| ||||| || | ||||| | || | || ||| | Sbjct 429507 AGCCACACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAA 429448 Query 48536 AATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATG 48595 || |||||||| |||| | |||| ||||| ||| || ||||||||| || Sbjct 429447 TATACCTTCTATTGAATCAGATTTCATTGATAATAAAAAGCATGAAGACATTTGGGGTCT 429388 Query 48596 ACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAA 48655 ||||| |||||||||||||| |||| |||||| |||| |||| | ||| | || Sbjct 429387 TGGTGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAA 429328 Query 48656 TTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCAT 48715 | ||| ||||| | | | || | ||| | |||||| ||||||||||| | ||| Sbjct 429327 ATGATAAGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCAT 429268 Query 48716 TAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTC 48775 ||| | || ||||| | ||||| |||||| ||||| || || | || || |||| Sbjct 429267 TAATAAATGCTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTC 429208 Query 48776 CAATGTTTTAAAACCAAAATAGTTGTA 48802 ||||||||||| |||||||| | ||| Sbjct 429207 TAATGTTTTAAATCCAAAATAATCGTA 429181 >seq10 Length=1559237 Score = 329 bits (364), Expect = 4e-85 Identities = 618/893 (69%), Gaps = 23/893 (3%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||||||||| || |||||||| |||||||||||||| |||||||| | ||| ||||| | Sbjct 1415798 TTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAA 1415739 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAA---TTCTAA 18785 ||||| || ||||||||||||| || | | ||| | | ||||| |||||| Sbjct 1415738 GTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAA 1415679 Query 18786 TAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTAT 18845 || | | ||| || ||||||| ||| ||| ||| | |||||||||| || Sbjct 1415678 TAATCG---ATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCATTCCAAT 1415622 Query 18846 TAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATAT 18905 ||| | | ||||| | || || |||| | ||||| | ||||| ||| | Sbjct 1415621 TAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAAC 1415562 Query 18906 AATAGATACAACTCTATCTTCATTAGGAGGGTATAG---AAGATGTTTAAACATCAAACA 18962 ||| | ||| ||||| | | | ||| || | | | || || ||||| Sbjct 1415561 TATATTTTGAACAACCTCTTC--TGGCAATTTATTTTCTAACAAGCTATAA-ATTAAACA 1415505 Query 18963 TGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACC 19022 |||||| |||| ||| || |||||||| |||||||||||| |||||||||||| Sbjct 1415504 ATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACC 1415445 Query 19023 AGGCATCAGTCCTCtttttttt--AACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 | | | | | | || ||||| ||||| ||||| | | ||| |||| ||| ||| Sbjct 1415444 ATGTA--ATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAAT 1415387 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 || ||||| || |||| ||| || | |||||| || || || || | || | Sbjct 1415386 ATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAG-AGT-TCGT-ATCGTTT 1415330 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 |||||||| |||||| || || ||||||| ||| || | || |||| || | Sbjct 1415329 ATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGA 1415270 Query 19201 AATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATT 19260 |||| || | | ||| | ||| ||| ||| ||| || |||||||| || || Sbjct 1415269 AATAAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTT 1415210 Query 19261 TCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATC 19320 || || || |||||||| | ||| || ||||| | ||||| | | ||||| |||| Sbjct 1415209 TCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATT 1415150 Query 19321 TGTACTTCACTACAAAATCTTTCGACC-AAATTTTCATTAACTATTCCATCACTAGCTGC 19379 |||||||| || ||||| || | | | |||||||| |||||||||||||||||||| Sbjct 1415149 TGTACTTCTCTTAAAAAT-TTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGC 1415091 Query 19380 AAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAA-T 19438 ||||||||||| |||||||| |||||||||||||||| | ||||| | ||| || | Sbjct 1415090 AAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGT 1415032 Query 19439 CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498 | || | ||| | |||||||||| ||||||| | |||||||| || ||||| ||||||| Sbjct 1415031 CTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTT 1414972 Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTT 19551 |||| | ||||||| ||| |||| |||||| || ||||||| || Sbjct 1414971 TATAAAAATTCCATACTTCAGGATACATAATAGGATGTAATGTAAATCTACTT 1414919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562105680296160