Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq10 284 1e-71 >seq10 Length=1559237 Score = 284 bits (314), Expect = 1e-71 Identities = 568/833 (68%), Gaps = 19/833 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 |||||| || ||||||||| ||| |||||| |||| || |||||||| ||||||| Sbjct 1415810 CATAACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTG 1415751 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATA---TAGTACTACA 36988 || ||||| ||||| || ||||||||| || || | | | | | || Sbjct 1415750 TAAAGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACC 1415691 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATA 37048 | | |||| | | || | ||| ||||||||||| ||||||| | |||| ||| | Sbjct 1415690 TAAACATTC--TAATAATCG-ATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGA 1415634 Query 37049 GTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTAC 37108 || || ||||||| | || | | || || |||| | |||||| | || Sbjct 1415633 ATTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAAC 1415574 Query 37109 AGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAA 37168 || |||||||||||||| || ||| ||||| | || || ||| | || | Sbjct 1415573 TGCTTCTTTAACTATATTTTGAACAACCTCTTCTGGCAATTTATTTTCTAACAAGCTATA 1415514 Query 37169 CAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAA 37228 | |||||| |||||| ||||| |||||||||||||| |||||||||||| ||| Sbjct 1415513 AATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAA 1415454 Query 37229 GGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGA 37288 ||||| || | | | | | |||||||| |||||||||||| |||| |||| Sbjct 1415453 TGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACT 1415394 Query 37289 AAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATA 37348 ||| || || ||||| || |||| ||||||| | | | | |||| | | Sbjct 1415393 AAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAG---AGTTCGT 1415337 Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408 ||| |||||||| || ||| ||| || ||| | | || ||||||| Sbjct 1415336 ATCGTTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAAT 1415277 Query 37409 TGCTTTTAAGAGAAAGtttttttCT-TCACT-ATCTGTTATATAAGTATCAATTAGTAAA 37466 || | || | || || | ||| | || ||| | |||||| ||||||||| |||| Sbjct 1415276 AGCATGAAATA--AATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAA 1415219 Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526 ||||| |||||||||| |||||||||| |||||| |||||| ||||||| | ||| Sbjct 1415218 CTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCT 1415159 Query 37527 TCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCA 37586 ||| || ||| || || | ||||| | ||||||| ||||| ||||| |||||| Sbjct 1415158 TCAATTATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCA 1415099 Query 37587 CTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT---CATTTGATAAT 37643 ||||||||||| || || || |||| ||||||||||||| |||||| |||| |||| Sbjct 1415098 CTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATT---TAAT 1415042 Query 37644 TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 |||| | || || | ||| |||||||||| | ||| ||| | |||||||| Sbjct 1415041 TTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAA 1414989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592313512641760