Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 3e-14 >seq6 Length=837512 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||||||||| ||||| |||||||| ||| | | || || || || || |||||||| Sbjct 386684 TCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAA 386625 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || | || |||||||| | |||| || || || || ||| || ||| ||| Sbjct 386624 ATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTT 386565 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||| || || | || || ||||| || || ||||||||||| Sbjct 386564 TCAATGGTATCAGATGGCTCAACATCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTACG 386505 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 386504 AAAATCTGCAT 386494 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||||||||| |||||||||||||| ||| | || || || || || || || || Sbjct 386456 TCTTTTTGAATGTTGTAATCAGATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAA 386397 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || | || |||||||| | |||| || || || || ||| || ||| ||| Sbjct 386396 ATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTT 386337 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || | || || || | ||||| |||||||| || |||||||||||| Sbjct 386336 TCAATAGTATCAGATGGTTCAACATCAAGAGTAATTGTTTTTCCGGTTAAAGTTTTTACA 386277 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 386276 AAGATTTGCAT 386266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380935538651412