Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq7 122 2e-22 >seq7 Length=1041357 Score = 122 bits (134), Expect = 2e-22 Identities = 187/262 (71%), Gaps = 6/262 (2%) Strand=Plus/Plus Query 133933 TATTCTAACTGCATGGAATGTTGGTGAACTAGATAAAATGACTTTGCCACCATGTCATTG 133992 |||| || |||||||||||| || ||||| ||||| | || || || |||||| Sbjct 912287 TATTTTATGTGCATGGAATGTAAAAGATTTAGATCAAATGGCATTACCTCCTTGTCATAT 912346 Query 133993 CTTTAGTCAATTCTTCGTAAATGACGGTAAGTTATCATGTATTCTATATCAACGTAGCTG 134052 || ||||||| | || ||| || || |||||||||||| | |||||| | || Sbjct 912347 TTTATGTCAATTTTATGTTTTTGATGGAAAATTATCATGTATTATGTATCAAAGATCTTG 912406 Query 134053 TGATCTA-TTCTTAGGAGTACCATTCAACATTGCTTCATATTCATTACTAACTCATATGT 134111 |||| || |||| || || |||||||| |||||||| ||||| || | || ||||| Sbjct 912407 TGATTTAGGTCTT-GGTGTTCCATTCAATATTGCTTCCTATTCTATATTTACATATATGA 912465 Query 134112 TAGCACAAGTTTGTGGGTTAGAAGTTGGTGAGTTTGT--ATGGATGGGTGGAGATGTTCA 134169 |||||||||| ||| ||| || | ||| ||| | ||| || | ||| ||| ||| Sbjct 912466 TAGCACAAGTATGTAATTTACAACCAGCTGAATTTATACATGTATTG--GGAAATGCTCA 912523 Query 134170 CATTTATAAAAATCACGTAGAA 134191 ||||||| ||||| || ||| Sbjct 912524 TGTTTATAATAATCATGTTGAA 912545 Score = 116 bits (128), Expect = 8e-21 Identities = 291/428 (68%), Gaps = 17/428 (4%) Strand=Plus/Plus Query 150358 AATTCAGATTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGT 150417 ||| || ||| | || | | ||| ||||| ||| | ||| | || || |||||||| Sbjct 765107 AATACAAATTTTGTCAAGGAGAACAAAAAATAATCCTATATTATTAGGGGATCCAGGTGT 765166 Query 150418 TGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGA 150477 |||||||||| ||| ||||| ||||| || | || | | || ||||| || || Sbjct 765167 TGGTAAAACAGCAATAGTTGAAGGATTGGCTATAAAAATTGTACAAGGAGATGTACCTGA 765226 Query 150478 TTCTATGAAAGATGTTGAAA--TTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACT 150535 ||| || ||| | | |||| | ||||||| ||||| | |||| | ||||||| || Sbjct 765227 TTC-ATTAAA-AGGAAGAAAGTTAGTTTCTTTAGATATGTCTTCATTAATTGCTGGTGCT 765284 Query 150536 AAGTATCGTGGTGAATTCGAAGAACGTGTAGA--CAATTTGCTACAAGAACTAAAAGAAC 150593 || ||| | ||||| || ||||||||| || | | |||| || ||||| | |||| Sbjct 765285 AAATATAGAGGTGATTTTGAAGAACGTTTAAAATCTATTT--TAAAAGAAATTCAAGATT 765342 Query 150594 GCGATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGA 150650 || | | || || |||| || ||||| || ||||| || | ||||||||||| | Sbjct 765343 CAGAGGGACAAGTAGTTATGTTTATTGATGAGATACATACGGTTGTTGGTGCTGGTGC-A 765401 Query 150651 CTGGC-GGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCT-CTATCTCGCGGTGA 150708 | || | ||| | || ||| | ||||| |||||||| ||| ||| | | || || Sbjct 765402 GTAGCAGAAGGTGCATTAGATGCAGGTAATATATTAAAACC-GCTACTAGCCAGAGGAGA 765460 Query 150709 AATTCG-TGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATG 150767 | | | ||| ||||||||||| || ||||||| | | || ||||||||| Sbjct 765461 ATTAAGATGT-ATCGGTGCAACTACTGTTAGTGAATATAGACAGTTTATAGAAAAAGATA 765519 Query 150768 CAGCACTA 150775 |||| || Sbjct 765520 AAGCATTA 765527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147583871645112