Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq6 333 1e-86 >seq6 Length=837512 Score = 333 bits (368), Expect = 1e-86 Identities = 459/630 (73%), Gaps = 13/630 (2%) Strand=Plus/Minus Query 25915 ATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCT 25974 ||||| || ||| | | |||||||||||| || | ||| || |||||||||||||| | Sbjct 429789 ATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCACG 429730 Query 25975 CGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGA 26034 ||||||| ||||||||| || ||||| ||| ||| |||||| || |||||||||||||| Sbjct 429729 AGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGA 429670 Query 26035 GTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTAC 26094 ||||||||||| | ||| | ||||||| |||||||||||||||||||||||||||||| Sbjct 429669 ATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCTAC 429610 Query 26095 GTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTT 26154 |||||||| || ||||| |||||| | ||||| || ||||| ||| |||| | || || Sbjct 429609 ATATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCATTTGATATACCATT 429550 Query 26155 TG-TGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCAC 26213 | | || || || | || | | ||||||||| || || | ||| || || | Sbjct 429549 AGTTCCTCTG-ATGTAAGAATTTTGAGCTCTAATATCTTGTACAGCCACACCTATACCTC 429491 Query 26214 CAGCCCATTTTGAAATAGCTGCACAAT-CTGAAACTGTATCGAAAATTCCTTTTATGCTA 26272 | || ||| ||| |||||| | || || ||| || || || |||| ||| | Sbjct 429490 CTGCTGTTTTACTAATCAATGCACATTGCTTTAA-TGTTTCAAATATACCTTCTATTGAA 429432 Query 26273 TCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTA 26332 ||| ||||||| ||||||||| || ||||| | ||| | | |||||| |||||| Sbjct 429431 TCAGATTTCATTGATAATAAAAAGCATGAAGACATTTGGGGTCTTGGTGTTCCCGAATTA 429372 Query 26333 AATAATGTCGGTGTAGCATGAGTATAATATCCT--TCAC-TCAAAGCTGTATAAGTTTCA 26389 |||||||| || |||||||||||| ||||| | | || | ||| || ||||||||| Sbjct 429371 AATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAA--TG-ATAAGTTTCT 429315 Query 26390 AGAACTTCATCGATATTGTAATTACTAACTTCAATAGCTGTTCTTAACCACATATATTGA 26449 | | | | || | || | || | | | |||| | ||| | | | || ||| Sbjct 429314 AAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATAAATGCTGA 429255 Query 26450 GGTCGTTCAATTACATTATTTTCCGCATCTCTAATCAAATAAGATTTTTCTAAAGTTTTC 26509 || |||||||| | ||||| | || |||| || ||||| ||||||| ||||| Sbjct 429254 GGACGTTCAATAATTTTATTAT--TAATACGTAAT-AAGTAAGACCTTTCTAATGTTTTA 429198 Query 26510 AATCCAAAATAATCATGATTGAAATCTCTT 26539 |||||||||||||| | ||| ||||||||| Sbjct 429197 AATCCAAAATAATCGTAATTAAAATCTCTT 429168 Score = 170 bits (188), Expect = 1e-37 Identities = 516/778 (66%), Gaps = 38/778 (5%) Strand=Plus/Minus Query 24982 AAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCT-TA 25040 ||||||| | | ||| || ||| | | || |||||| ||| ||||| | ||| || Sbjct 430695 AAGATCTTTTAACAAATGAGGATTAACAACAAAAAATTCACCACTTAAAACACGTCTGTA 430636 Query 25041 TTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAG 25100 | | | ||| || |||||||||| |||||||||||||||| ||||| || || | Sbjct 430635 ATAA-ATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGCGACGTTG 430577 Query 25101 ATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTT 25160 | ||||||||||| ||||| | || |||||||| || |||| |||| || | || Sbjct 430576 AAGCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTT 430517 Query 25161 GTTTTAATTTATCCCAATCTAAATTATTATCTAACTCGATATCGTTATCAT---ATAAAT 25217 ||||||| ||||||||| ||| |||| || |||| | || ||| | | || Sbjct 430516 TTTTTAATAAATCCCAATCCCAATATTTAT-TA--TCGA---CTTTTGCATTCCACATAT 430463 Query 25218 CAAATTGTAACAATCC---ACTTGCTGCAGGCGATTGATCAAAAGTTGAATATTTACCTT 25274 |||||||||| | ||| ||||||| | ||||| | | | |||| || Sbjct 430462 CAAATTGTAATATTCCTTGGCTTGCTGGACTACCTTGAT---ATGATTCATATGGTCCAC 430406 Query 25275 TTGTTATTGCCATATCTTTTGATTGCTCTAACGCAGCATAATACATATTTTCAAAAATCG 25334 || | ||||| || || ||||| ||||||||||||||| ||||||| || Sbjct 430405 TTACTTGTGCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTC 430346 Query 25335 CTTTGTTTAAAAACTTAGCTTTTTCTCCATCGAAAGCAATTTCCATTAAGGC--GAACGT 25392 | | ||||| ||||||| ||| || | | | | | | || || || || Sbjct 430345 TTCTATTTAATTCTTTAGCTTCTTCAGATTCATATGGA--TATCTTAAAAGCATAAATGT 430288 Query 25393 ATCTGCTAATCCCTGAACTCCTAATCCAACTGGACGATGTTTATTATTACTTATCTCAGT 25452 |||||||||||| || ||||||| ||||| || | |||| | ||||| | | || | Sbjct 430287 ATCTGCTAATCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGC 430228 Query 25453 TTCTGATGTTGGATAGAAATTTGTATCGATCACATTATCTAGATTCTTTATGGCAAGCTT 25512 |||| |||||| ||||| | || || | ||||||| ||| | || | | || Sbjct 430227 TTCTTTAACTGGATAATAATTTCTTTCAATAATTTTATCTAAATT-TCTA-GTAATAATT 430170 Query 25513 TGTGTATTTTCTCAACTCAATAAAGTCAAAATAAGGCTTATCGTTTATATCTCTTTTTAC 25572 | ||| | || | ||| | ||| ||| || ||| | ||||| | || Sbjct 430169 TTAGTAATATC---ATATAATTTTTTAAAATTAA----ATTCTTTTTTTTCTCTATCAAC 430117 Query 25573 AAATTTAGATAAAGCGATTGATGCTAAATTACAAACAGCTTGTTCTTTCCCGTCA-GAAT 25631 |||||| |||| || || || |||||||||||||||||| ||| || || | | || Sbjct 430116 AAATTTGCATAATGCAATGGAAGCTAAATTACAAACAGCTACTTC-ATCAGGTGATGTAT 430058 Query 25632 ATTCATTGATCTCGATACATAAGTTGCTAGATTTGATTACTCCATAATTCTTTTGATT-- 25689 ||||| | || || |||||| || || |||| ||| ||| |||| |||||||| Sbjct 430057 ATTCAATAATTTCACAACATAAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCG 429998 Query 25690 ATTGCATGTATTGACA-ATATCTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTG 25746 ||| | | | ||| |||||||||| | |||||| || ||||| ||||| Sbjct 429997 ATT---TAGAATTACATGCATCTTTATATAACATATATGGTACACCAGTTTCTATTTG 429943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253038630737300